miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 1247 0.68 0.387844
Target:  5'- uCUGGCAU-AGGCCcuuuugcugaguGGCCAUCAGUGGu -3'
miRNA:   3'- cGGCUGUAgUCUGG------------CCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 4536 0.7 0.306031
Target:  5'- --gGACG-CGGACCGGUCACCuuGGCaGGg -3'
miRNA:   3'- cggCUGUaGUCUGGCCGGUGG--UCG-CC- -5'
22272 3' -58.5 NC_005045.1 + 4924 0.67 0.415039
Target:  5'- cGCCGGCGucuaUCAGguGCUGGuCCGCUucAGCGa -3'
miRNA:   3'- -CGGCUGU----AGUC--UGGCC-GGUGG--UCGCc -5'
22272 3' -58.5 NC_005045.1 + 5280 0.67 0.424361
Target:  5'- aGCCGACggCu--CCaGGCCGCCgAGCGc -3'
miRNA:   3'- -CGGCUGuaGucuGG-CCGGUGG-UCGCc -5'
22272 3' -58.5 NC_005045.1 + 5901 0.84 0.031949
Target:  5'- gGCgGACAgCGGGCCGGCCuucuucgauACCAGCGGg -3'
miRNA:   3'- -CGgCUGUaGUCUGGCCGG---------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 5976 0.66 0.472763
Target:  5'- uCCGGCAUCgcgcaGGGCaCGGuuuaCCGCCAGCu- -3'
miRNA:   3'- cGGCUGUAG-----UCUG-GCC----GGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 6121 0.67 0.456962
Target:  5'- cGUCGucccaAUaCAGGCCGGCCcguugaccuaccuccACCAGcCGGg -3'
miRNA:   3'- -CGGCug---UA-GUCUGGCCGG---------------UGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 6173 0.66 0.492892
Target:  5'- aGCCGACAgacGGCCucggucggGGCCACCgucAGCa- -3'
miRNA:   3'- -CGGCUGUaguCUGG--------CCGGUGG---UCGcc -5'
22272 3' -58.5 NC_005045.1 + 8709 0.7 0.306031
Target:  5'- uGCCcGCAUCAGGaggCGcuGCCACCAGCa- -3'
miRNA:   3'- -CGGcUGUAGUCUg--GC--CGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 8725 0.68 0.370377
Target:  5'- uUCGACc-CAGGCCGGCCcauCCuGUGGc -3'
miRNA:   3'- cGGCUGuaGUCUGGCCGGu--GGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 10365 0.66 0.472763
Target:  5'- uGCaGGCAcuUCAGcUCGGCCuuggUCAGCGGg -3'
miRNA:   3'- -CGgCUGU--AGUCuGGCCGGu---GGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 10709 0.66 0.472763
Target:  5'- uCCGGCAcCGuGGCC-GCCACCGGCc- -3'
miRNA:   3'- cGGCUGUaGU-CUGGcCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 12932 0.68 0.378171
Target:  5'- uGCCaGGCgguacaagugcauGUCAGuGCCGGCCAUCAGUu- -3'
miRNA:   3'- -CGG-CUG-------------UAGUC-UGGCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 13028 0.76 0.12192
Target:  5'- aGCCuGCAUCAugcGACCGuGCCACgGGUGGu -3'
miRNA:   3'- -CGGcUGUAGU---CUGGC-CGGUGgUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 13144 0.68 0.396779
Target:  5'- -gCGACAgugCAGA--GGCCACCAGCc- -3'
miRNA:   3'- cgGCUGUa--GUCUggCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 13244 0.68 0.394084
Target:  5'- uGCCGGCAUCuGGuccUCGGCCuuguacaugacgagGCUGGUGGc -3'
miRNA:   3'- -CGGCUGUAGuCU---GGCCGG--------------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 15076 0.66 0.472763
Target:  5'- uUCGACggCAGcgggagccgccACCggGGCCACCuGCGGc -3'
miRNA:   3'- cGGCUGuaGUC-----------UGG--CCGGUGGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 15159 0.68 0.388732
Target:  5'- cGCCGACGgccccgccuacguGGCugCGGCCACUAcGCGGa -3'
miRNA:   3'- -CGGCUGUagu----------CUG--GCCGGUGGU-CGCC- -5'
22272 3' -58.5 NC_005045.1 + 15916 0.7 0.306031
Target:  5'- aGCCGAgAccuUCGu-CCGGCCuuccGCCAGUGGa -3'
miRNA:   3'- -CGGCUgU---AGUcuGGCCGG----UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 15932 0.71 0.246799
Target:  5'- aGUCGGCGUUcGGCgcauccacagcaccuCGGCCuccGCCAGCGGg -3'
miRNA:   3'- -CGGCUGUAGuCUG---------------GCCGG---UGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.