miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22275 3' -55 NC_005045.1 + 23482 0.67 0.562881
Target:  5'- -cGCCGGCCuucacUCCCAacGGggAGAucguaGGCa -3'
miRNA:   3'- uaUGGCCGGuu---AGGGU--CCuaUCU-----CCG- -5'
22275 3' -55 NC_005045.1 + 5842 0.67 0.585329
Target:  5'- -gGCCGGCCcgcuGUCCgccaAGGAcuucGAGGUa -3'
miRNA:   3'- uaUGGCCGGu---UAGGg---UCCUau--CUCCG- -5'
22275 3' -55 NC_005045.1 + 19590 0.66 0.59662
Target:  5'- cUACuCGGCUAuUCuCCGGGAcgAGAucGGCg -3'
miRNA:   3'- uAUG-GCCGGUuAG-GGUCCUa-UCU--CCG- -5'
22275 3' -55 NC_005045.1 + 26863 0.66 0.607943
Target:  5'- -cACUGGCCcugCgCUGGGAU-GAGGCu -3'
miRNA:   3'- uaUGGCCGGuuaG-GGUCCUAuCUCCG- -5'
22275 3' -55 NC_005045.1 + 31077 0.66 0.630646
Target:  5'- -aACUGGCuCAGUUCgAGGcuuaccgaggGGAGGCg -3'
miRNA:   3'- uaUGGCCG-GUUAGGgUCCua--------UCUCCG- -5'
22275 3' -55 NC_005045.1 + 32460 0.66 0.642005
Target:  5'- gAUACCGGCC-AUCCCGcGAcguGAcacGGCc -3'
miRNA:   3'- -UAUGGCCGGuUAGGGUcCUau-CU---CCG- -5'
22275 3' -55 NC_005045.1 + 29103 0.71 0.325912
Target:  5'- cGUACUGGCCAAaCCauucgugaAGGGUGGuuGGCg -3'
miRNA:   3'- -UAUGGCCGGUUaGGg-------UCCUAUCu-CCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.