miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 3' -54 NC_005045.1 + 32221 1.11 0.000633
Target:  5'- cCAGCCCAGCAACAUACCCGACUUGCCc -3'
miRNA:   3'- -GUCGGGUCGUUGUAUGGGCUGAACGG- -5'
22276 3' -54 NC_005045.1 + 40332 0.75 0.233197
Target:  5'- gCGGCCCuuGCGACGcuCCCGGCccaUGCCg -3'
miRNA:   3'- -GUCGGGu-CGUUGUauGGGCUGa--ACGG- -5'
22276 3' -54 NC_005045.1 + 16699 0.72 0.362067
Target:  5'- gCGGCCCAGCcaguGCAgcgcGCCCuucuuggcguACUUGCCg -3'
miRNA:   3'- -GUCGGGUCGu---UGUa---UGGGc---------UGAACGG- -5'
22276 3' -54 NC_005045.1 + 17456 0.72 0.371024
Target:  5'- -cGCCgCAGUGAUAgUGCUCGuACUUGCCg -3'
miRNA:   3'- guCGG-GUCGUUGU-AUGGGC-UGAACGG- -5'
22276 3' -54 NC_005045.1 + 41428 0.71 0.38013
Target:  5'- cCAGCCCGGCAccgacaaccGCAUcGCCCuacacgacaugGACgagGCCg -3'
miRNA:   3'- -GUCGGGUCGU---------UGUA-UGGG-----------CUGaa-CGG- -5'
22276 3' -54 NC_005045.1 + 34190 0.71 0.408331
Target:  5'- -uGUCCAGCGACAgucgGCCC---UUGCCg -3'
miRNA:   3'- guCGGGUCGUUGUa---UGGGcugAACGG- -5'
22276 3' -54 NC_005045.1 + 30553 0.7 0.437803
Target:  5'- -cGCCCGGCgGACAUGCUCaGAacgGCCu -3'
miRNA:   3'- guCGGGUCG-UUGUAUGGG-CUgaaCGG- -5'
22276 3' -54 NC_005045.1 + 10728 0.7 0.437803
Target:  5'- gUAGCCCA-CGACGcgGCCCacguuCUUGCCa -3'
miRNA:   3'- -GUCGGGUcGUUGUa-UGGGcu---GAACGG- -5'
22276 3' -54 NC_005045.1 + 10693 0.7 0.447895
Target:  5'- -uGCCCAuC-ACGUACCCGACgauacGCCc -3'
miRNA:   3'- guCGGGUcGuUGUAUGGGCUGaa---CGG- -5'
22276 3' -54 NC_005045.1 + 14584 0.69 0.489494
Target:  5'- gCAGCCCGuaCAAUGUACCgGAacUGCCg -3'
miRNA:   3'- -GUCGGGUc-GUUGUAUGGgCUgaACGG- -5'
22276 3' -54 NC_005045.1 + 20184 0.69 0.509879
Target:  5'- uGGCCUcguacagAGUGACGUACUCGACa-GCCu -3'
miRNA:   3'- gUCGGG-------UCGUUGUAUGGGCUGaaCGG- -5'
22276 3' -54 NC_005045.1 + 39358 0.69 0.510962
Target:  5'- -cGCCCAGCcACggGUGCCguCGAggccCUUGCCg -3'
miRNA:   3'- guCGGGUCGuUG--UAUGG--GCU----GAACGG- -5'
22276 3' -54 NC_005045.1 + 18766 0.69 0.510962
Target:  5'- gCGGCgCCAGCAuCAcGCuCCGGCcaggGCCg -3'
miRNA:   3'- -GUCG-GGUCGUuGUaUG-GGCUGaa--CGG- -5'
22276 3' -54 NC_005045.1 + 5362 0.69 0.510962
Target:  5'- --uCCCAGCGACGUgcgcGCUCGGCg-GCCu -3'
miRNA:   3'- gucGGGUCGUUGUA----UGGGCUGaaCGG- -5'
22276 3' -54 NC_005045.1 + 27793 0.69 0.521842
Target:  5'- cCAGCucaCCAGCGACGgucGCCuCGAUacGCCg -3'
miRNA:   3'- -GUCG---GGUCGUUGUa--UGG-GCUGaaCGG- -5'
22276 3' -54 NC_005045.1 + 41070 0.69 0.521842
Target:  5'- aGGCCCGGUAGCu--CUgGACgaaGCCg -3'
miRNA:   3'- gUCGGGUCGUUGuauGGgCUGaa-CGG- -5'
22276 3' -54 NC_005045.1 + 40526 0.69 0.532811
Target:  5'- gCAGCCCuGGCGGC-UGCCCucgccGGcCUUGUCg -3'
miRNA:   3'- -GUCGGG-UCGUUGuAUGGG-----CU-GAACGG- -5'
22276 3' -54 NC_005045.1 + 11934 0.69 0.532811
Target:  5'- aGGCCgAGCugaagaAGCugAUGCCCGACUUcCCa -3'
miRNA:   3'- gUCGGgUCG------UUG--UAUGGGCUGAAcGG- -5'
22276 3' -54 NC_005045.1 + 5020 0.68 0.543861
Target:  5'- gCAGCCCAggcuGCAACc--CUCGACgaaGCCa -3'
miRNA:   3'- -GUCGGGU----CGUUGuauGGGCUGaa-CGG- -5'
22276 3' -54 NC_005045.1 + 20152 0.68 0.543861
Target:  5'- uCGGCCC-GCAGCcggACCCGcACUU-CCu -3'
miRNA:   3'- -GUCGGGuCGUUGua-UGGGC-UGAAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.