miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 3' -54 NC_005045.1 + 3119 0.67 0.634191
Target:  5'- -cGCCUgacaGGUGACAUGCCCGgacaGCggacUGCCc -3'
miRNA:   3'- guCGGG----UCGUUGUAUGGGC----UGa---ACGG- -5'
22276 3' -54 NC_005045.1 + 4280 0.66 0.663773
Target:  5'- uCAGCCCGGuCAGUAggcCCCGGCcuacugcacguagUGCCa -3'
miRNA:   3'- -GUCGGGUC-GUUGUau-GGGCUGa------------ACGG- -5'
22276 3' -54 NC_005045.1 + 5020 0.68 0.543861
Target:  5'- gCAGCCCAggcuGCAACc--CUCGACgaaGCCa -3'
miRNA:   3'- -GUCGGGU----CGUUGuauGGGCUGaa-CGG- -5'
22276 3' -54 NC_005045.1 + 5067 0.68 0.566175
Target:  5'- aGGCCCGcacGUAAUAgGCCCGGCccuccggGCCu -3'
miRNA:   3'- gUCGGGU---CGUUGUaUGGGCUGaa-----CGG- -5'
22276 3' -54 NC_005045.1 + 5155 0.68 0.588718
Target:  5'- cUAGCUC-GCAAUAgGCCCGGaggGCCg -3'
miRNA:   3'- -GUCGGGuCGUUGUaUGGGCUgaaCGG- -5'
22276 3' -54 NC_005045.1 + 5362 0.69 0.510962
Target:  5'- --uCCCAGCGACGUgcgcGCUCGGCg-GCCu -3'
miRNA:   3'- gucGGGUCGUUGUA----UGGGCUGaaCGG- -5'
22276 3' -54 NC_005045.1 + 5512 0.68 0.588718
Target:  5'- aCGGCCaaaccugcgguCAGCAgGCAUACCCaGGCcaugauggUUGCCu -3'
miRNA:   3'- -GUCGG-----------GUCGU-UGUAUGGG-CUG--------AACGG- -5'
22276 3' -54 NC_005045.1 + 5653 0.67 0.645581
Target:  5'- aGGCgUgGGCGA-AUGCCCGGCUcuugGCCa -3'
miRNA:   3'- gUCG-GgUCGUUgUAUGGGCUGAa---CGG- -5'
22276 3' -54 NC_005045.1 + 6011 0.67 0.634191
Target:  5'- uCAGCCUcaAGCAggGCuugACCCGGCUgGUg -3'
miRNA:   3'- -GUCGGG--UCGU--UGua-UGGGCUGAaCGg -5'
22276 3' -54 NC_005045.1 + 6027 0.68 0.577422
Target:  5'- cCGGUCC-GCAAgcuucCGUACCCGGCU-GCg -3'
miRNA:   3'- -GUCGGGuCGUU-----GUAUGGGCUGAaCGg -5'
22276 3' -54 NC_005045.1 + 10273 0.68 0.554985
Target:  5'- aCAGUCCAGCAcCAgACCgGAgUccagGCCg -3'
miRNA:   3'- -GUCGGGUCGUuGUaUGGgCUgAa---CGG- -5'
22276 3' -54 NC_005045.1 + 10693 0.7 0.447895
Target:  5'- -uGCCCAuC-ACGUACCCGACgauacGCCc -3'
miRNA:   3'- guCGGGUcGuUGUAUGGGCUGaa---CGG- -5'
22276 3' -54 NC_005045.1 + 10728 0.7 0.437803
Target:  5'- gUAGCCCA-CGACGcgGCCCacguuCUUGCCa -3'
miRNA:   3'- -GUCGGGUcGUUGUa-UGGGcu---GAACGG- -5'
22276 3' -54 NC_005045.1 + 11934 0.69 0.532811
Target:  5'- aGGCCgAGCugaagaAGCugAUGCCCGACUUcCCa -3'
miRNA:   3'- gUCGGgUCG------UUG--UAUGGGCUGAAcGG- -5'
22276 3' -54 NC_005045.1 + 14584 0.69 0.489494
Target:  5'- gCAGCCCGuaCAAUGUACCgGAacUGCCg -3'
miRNA:   3'- -GUCGGGUc-GUUGUAUGGgCUgaACGG- -5'
22276 3' -54 NC_005045.1 + 14661 0.66 0.700982
Target:  5'- aGGUCCAGCGGCAguUCCGguacauuguacggGC-UGCCa -3'
miRNA:   3'- gUCGGGUCGUUGUauGGGC-------------UGaACGG- -5'
22276 3' -54 NC_005045.1 + 14970 0.67 0.600052
Target:  5'- gGGCCCAa-AGCGUGcucCCUGACgUGCCg -3'
miRNA:   3'- gUCGGGUcgUUGUAU---GGGCUGaACGG- -5'
22276 3' -54 NC_005045.1 + 15003 0.66 0.702099
Target:  5'- uGGCCCcgguGGCGGCu--CCCG-C-UGCCg -3'
miRNA:   3'- gUCGGG----UCGUUGuauGGGCuGaACGG- -5'
22276 3' -54 NC_005045.1 + 15043 0.66 0.702099
Target:  5'- -uGuCCCGGUAAU---CCCGGCggUGCCg -3'
miRNA:   3'- guC-GGGUCGUUGuauGGGCUGa-ACGG- -5'
22276 3' -54 NC_005045.1 + 16699 0.72 0.362067
Target:  5'- gCGGCCCAGCcaguGCAgcgcGCCCuucuuggcguACUUGCCg -3'
miRNA:   3'- -GUCGGGUCGu---UGUa---UGGGc---------UGAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.