miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 3' -54 NC_005045.1 + 41428 0.71 0.38013
Target:  5'- cCAGCCCGGCAccgacaaccGCAUcGCCCuacacgacaugGACgagGCCg -3'
miRNA:   3'- -GUCGGGUCGU---------UGUA-UGGG-----------CUGaa-CGG- -5'
22276 3' -54 NC_005045.1 + 25893 0.66 0.66831
Target:  5'- cCAGCUCAGCgAGCAgaucaacauggUAUCCGAUcccgUGUCa -3'
miRNA:   3'- -GUCGGGUCG-UUGU-----------AUGGGCUGa---ACGG- -5'
22276 3' -54 NC_005045.1 + 18211 0.66 0.690893
Target:  5'- gGGgCCGGCAGCcaaGCuCCGgcACUUGCUg -3'
miRNA:   3'- gUCgGGUCGUUGua-UG-GGC--UGAACGG- -5'
22276 3' -54 NC_005045.1 + 15003 0.66 0.702099
Target:  5'- uGGCCCcgguGGCGGCu--CCCG-C-UGCCg -3'
miRNA:   3'- gUCGGG----UCGUUGuauGGGCuGaACGG- -5'
22276 3' -54 NC_005045.1 + 32625 0.66 0.702099
Target:  5'- gGGCCUggGGCAGCGUACcgcguuCCGugUggUGCa -3'
miRNA:   3'- gUCGGG--UCGUUGUAUG------GGCugA--ACGg -5'
22276 3' -54 NC_005045.1 + 15043 0.66 0.702099
Target:  5'- -uGuCCCGGUAAU---CCCGGCggUGCCg -3'
miRNA:   3'- guC-GGGUCGUUGuauGGGCUGa-ACGG- -5'
22276 3' -54 NC_005045.1 + 23168 0.66 0.712124
Target:  5'- gGGCCUcGCuaaccugguugccAACAUAccCCCGGC-UGCCg -3'
miRNA:   3'- gUCGGGuCG-------------UUGUAU--GGGCUGaACGG- -5'
22276 3' -54 NC_005045.1 + 33650 0.66 0.713233
Target:  5'- -uGCCUacGGUAGCGUccgcguagACCCGAaccUGCCg -3'
miRNA:   3'- guCGGG--UCGUUGUA--------UGGGCUga-ACGG- -5'
22276 3' -54 NC_005045.1 + 35957 0.66 0.713233
Target:  5'- aGGCgCuGCGcCGUGCCCugGGCUUcGCCg -3'
miRNA:   3'- gUCGgGuCGUuGUAUGGG--CUGAA-CGG- -5'
22276 3' -54 NC_005045.1 + 25966 0.66 0.66831
Target:  5'- uGGCCCAccuGCuGCAUACC-GACcaGCCc -3'
miRNA:   3'- gUCGGGU---CGuUGUAUGGgCUGaaCGG- -5'
22276 3' -54 NC_005045.1 + 41218 0.67 0.634191
Target:  5'- aCAGCCUGuGCAACcgcCCCGGCgcccgcugUGCUg -3'
miRNA:   3'- -GUCGGGU-CGUUGuauGGGCUGa-------ACGG- -5'
22276 3' -54 NC_005045.1 + 6011 0.67 0.634191
Target:  5'- uCAGCCUcaAGCAggGCuugACCCGGCUgGUg -3'
miRNA:   3'- -GUCGGG--UCGU--UGua-UGGGCUGAaCGg -5'
22276 3' -54 NC_005045.1 + 14584 0.69 0.489494
Target:  5'- gCAGCCCGuaCAAUGUACCgGAacUGCCg -3'
miRNA:   3'- -GUCGGGUc-GUUGUAUGGgCUgaACGG- -5'
22276 3' -54 NC_005045.1 + 11934 0.69 0.532811
Target:  5'- aGGCCgAGCugaagaAGCugAUGCCCGACUUcCCa -3'
miRNA:   3'- gUCGGgUCG------UUG--UAUGGGCUGAAcGG- -5'
22276 3' -54 NC_005045.1 + 40526 0.69 0.532811
Target:  5'- gCAGCCCuGGCGGC-UGCCCucgccGGcCUUGUCg -3'
miRNA:   3'- -GUCGGG-UCGUUGuAUGGG-----CU-GAACGG- -5'
22276 3' -54 NC_005045.1 + 5020 0.68 0.543861
Target:  5'- gCAGCCCAggcuGCAACc--CUCGACgaaGCCa -3'
miRNA:   3'- -GUCGGGU----CGUUGuauGGGCUGaa-CGG- -5'
22276 3' -54 NC_005045.1 + 5067 0.68 0.566175
Target:  5'- aGGCCCGcacGUAAUAgGCCCGGCccuccggGCCu -3'
miRNA:   3'- gUCGGGU---CGUUGUaUGGGCUGaa-----CGG- -5'
22276 3' -54 NC_005045.1 + 37616 0.68 0.588718
Target:  5'- aAGUUCGGUGACuaccGUACCCGugU-GCCc -3'
miRNA:   3'- gUCGGGUCGUUG----UAUGGGCugAaCGG- -5'
22276 3' -54 NC_005045.1 + 14970 0.67 0.600052
Target:  5'- gGGCCCAa-AGCGUGcucCCUGACgUGCCg -3'
miRNA:   3'- gUCGGGUcgUUGUAU---GGGCUGaACGG- -5'
22276 3' -54 NC_005045.1 + 23290 0.67 0.600052
Target:  5'- -cGCCgCAGCAACuggccauCCCGACccagcaGCCg -3'
miRNA:   3'- guCGG-GUCGUUGuau----GGGCUGaa----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.