miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22277 5' -56.1 NC_005045.1 + 32773 0.66 0.605941
Target:  5'- gUAGGCaccaaccCGGugACCgugCUCCACGAAGCg -3'
miRNA:   3'- -GUCCGac-----GCCuaUGG---GAGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 8670 0.66 0.605941
Target:  5'- -cGGC-GUGGAgGCCCUUCAUGuacgccGGCa -3'
miRNA:   3'- guCCGaCGCCUaUGGGAGGUGCu-----UCG- -5'
22277 5' -56.1 NC_005045.1 + 7739 0.66 0.605941
Target:  5'- uGGGCUaCGGGUAUCCUgccccggauuaCCAUGGauGGCc -3'
miRNA:   3'- gUCCGAcGCCUAUGGGA-----------GGUGCU--UCG- -5'
22277 5' -56.1 NC_005045.1 + 36681 0.66 0.5948
Target:  5'- uGGGCUGaggcuGGGU-CCCugUCCAUGGAGa -3'
miRNA:   3'- gUCCGACg----CCUAuGGG--AGGUGCUUCg -5'
22277 5' -56.1 NC_005045.1 + 39320 0.66 0.58369
Target:  5'- gCGGGUUGUGGccuuucUCCUCCAgGcGAGCg -3'
miRNA:   3'- -GUCCGACGCCuau---GGGAGGUgC-UUCG- -5'
22277 5' -56.1 NC_005045.1 + 14652 0.66 0.58369
Target:  5'- aAGGaaucCUG-GGAUGCCCUCUucauCGAAGg -3'
miRNA:   3'- gUCC----GACgCCUAUGGGAGGu---GCUUCg -5'
22277 5' -56.1 NC_005045.1 + 20097 0.66 0.580366
Target:  5'- -cGGCUGCGGGccgaggcugucgagUACgucaCUCUguACGAGGCc -3'
miRNA:   3'- guCCGACGCCU--------------AUGg---GAGG--UGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 25188 0.66 0.561606
Target:  5'- aAGGC-GCcGAUACCCUUCAguuCGAuGGCa -3'
miRNA:   3'- gUCCGaCGcCUAUGGGAGGU---GCU-UCG- -5'
22277 5' -56.1 NC_005045.1 + 42094 0.66 0.561606
Target:  5'- gUAGGCccucgucugGUGGGccacugccUAgCCUCCugGGAGCu -3'
miRNA:   3'- -GUCCGa--------CGCCU--------AUgGGAGGugCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 31 0.66 0.561606
Target:  5'- gUAGGCccucgucugGUGGGccacugccUAgCCUCCugGGAGCu -3'
miRNA:   3'- -GUCCGa--------CGCCU--------AUgGGAGGugCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 33415 0.67 0.547372
Target:  5'- cCGGGCUGggccaGGAggucgGCCUcacugaagaaccggUUCACGAAGCc -3'
miRNA:   3'- -GUCCGACg----CCUa----UGGG--------------AGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 23962 0.67 0.496994
Target:  5'- gGGuGCUGCGGcaccUGCCCuggcagcucugUCCGCuGAGCa -3'
miRNA:   3'- gUC-CGACGCCu---AUGGG-----------AGGUGcUUCG- -5'
22277 5' -56.1 NC_005045.1 + 33911 0.68 0.476188
Target:  5'- cCGGGCUGaCGccGAUACCaUCCAC-AGGCc -3'
miRNA:   3'- -GUCCGAC-GC--CUAUGGgAGGUGcUUCG- -5'
22277 5' -56.1 NC_005045.1 + 34645 0.68 0.465948
Target:  5'- cCGGGUUGCGGcgcaugGCCC-CaACGAAGUc -3'
miRNA:   3'- -GUCCGACGCCua----UGGGaGgUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 33031 0.68 0.455824
Target:  5'- gGGGcCUGaCGGAUACCCgauUCCA-GAGGa -3'
miRNA:   3'- gUCC-GAC-GCCUAUGGG---AGGUgCUUCg -5'
22277 5' -56.1 NC_005045.1 + 35323 0.68 0.455824
Target:  5'- -uGGCcaucuUGCGGAUGCCUUCguCaGAGGUg -3'
miRNA:   3'- guCCG-----ACGCCUAUGGGAGguG-CUUCG- -5'
22277 5' -56.1 NC_005045.1 + 7029 0.68 0.435938
Target:  5'- uGGGCU--GGAgcaccACCCaCCGCGAGGCg -3'
miRNA:   3'- gUCCGAcgCCUa----UGGGaGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 5655 0.69 0.416562
Target:  5'- aUAGGCguggGCGaAUGCCCggcucuuggCCACGcGGCg -3'
miRNA:   3'- -GUCCGa---CGCcUAUGGGa--------GGUGCuUCG- -5'
22277 5' -56.1 NC_005045.1 + 12133 0.69 0.407073
Target:  5'- uCAG--UGCGGGU-CCCgaUCCACGAAGUg -3'
miRNA:   3'- -GUCcgACGCCUAuGGG--AGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 10462 0.69 0.407073
Target:  5'- gAGGCUGCGGAccauggcgcgGCgCUCaucguaCACGAGGUg -3'
miRNA:   3'- gUCCGACGCCUa---------UGgGAG------GUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.