miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22278 5' -56.5 NC_005045.1 + 30480 0.66 0.593386
Target:  5'- -aACGAGGCCGuucugagcauGUACCgc--CGGGCGa -3'
miRNA:   3'- agUGCUUCGGU----------CGUGGaaguGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 11102 0.66 0.593386
Target:  5'- gCACGAGGUCcccauccuGCACCUgUCGCagugGGGCc -3'
miRNA:   3'- aGUGCUUCGGu-------CGUGGA-AGUG----CCCGc -5'
22278 5' -56.5 NC_005045.1 + 14130 0.66 0.582321
Target:  5'- -gGCGGucgcaucuucccGGCgGGCACCgcCAUGGGCc -3'
miRNA:   3'- agUGCU------------UCGgUCGUGGaaGUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 41443 0.66 0.582321
Target:  5'- gUUACG--GCCAGCGagguaCUgcUCGCGGGUGu -3'
miRNA:   3'- -AGUGCuuCGGUCGUg----GA--AGUGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 5041 0.66 0.571298
Target:  5'- -gACGAAGCCAuCGCCca---GGGCGa -3'
miRNA:   3'- agUGCUUCGGUcGUGGaagugCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 10240 0.66 0.571298
Target:  5'- cCugGAAGgCAuGC-CCUUCAgugaggcgacCGGGCGu -3'
miRNA:   3'- aGugCUUCgGU-CGuGGAAGU----------GCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 28500 0.66 0.571298
Target:  5'- cUC-CGAGGUUGGCGauaUCGCGGGCa -3'
miRNA:   3'- -AGuGCUUCGGUCGUggaAGUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 11806 0.66 0.560327
Target:  5'- aCACGAGGgCGGUauucucgaugucACCg-CACGGGCc -3'
miRNA:   3'- aGUGCUUCgGUCG------------UGGaaGUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 12495 0.66 0.560327
Target:  5'- -gGCGucGCCgcuGGUGCUgaaCACGGGCGa -3'
miRNA:   3'- agUGCuuCGG---UCGUGGaa-GUGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 18268 0.66 0.560327
Target:  5'- cUugGcuGCCGGCcccgccGCCUUCGCuuccugguGGGCGa -3'
miRNA:   3'- aGugCuuCGGUCG------UGGAAGUG--------CCCGC- -5'
22278 5' -56.5 NC_005045.1 + 4983 0.66 0.548326
Target:  5'- aCGUGAAGCCAGCGCCaucCGCGccguccagucgucGGCa -3'
miRNA:   3'- aGUGCUUCGGUCGUGGaa-GUGC-------------CCGc -5'
22278 5' -56.5 NC_005045.1 + 39006 0.66 0.538568
Target:  5'- cCACGAagaacGGCCucaccGcCACCga-GCGGGCGa -3'
miRNA:   3'- aGUGCU-----UCGGu----C-GUGGaagUGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 33755 0.66 0.538568
Target:  5'- -aGCGGucGGCCAGgGCCUUgAUGGucgGCGg -3'
miRNA:   3'- agUGCU--UCGGUCgUGGAAgUGCC---CGC- -5'
22278 5' -56.5 NC_005045.1 + 3474 0.67 0.527796
Target:  5'- aCACGAAgGCaCAGcCGCCUg-AUGGGCu -3'
miRNA:   3'- aGUGCUU-CG-GUC-GUGGAagUGCCCGc -5'
22278 5' -56.5 NC_005045.1 + 4221 0.67 0.527796
Target:  5'- aUCACGAguGGCCAgauGCACCcgaUCACGcauGCGu -3'
miRNA:   3'- -AGUGCU--UCGGU---CGUGGa--AGUGCc--CGC- -5'
22278 5' -56.5 NC_005045.1 + 4993 0.67 0.517106
Target:  5'- -aGCGGA-CCAGCACCUgauagaCGCcGGCGa -3'
miRNA:   3'- agUGCUUcGGUCGUGGAa-----GUGcCCGC- -5'
22278 5' -56.5 NC_005045.1 + 9659 0.67 0.485585
Target:  5'- --gUGAGGgCGGUAUCUUCAaGGGCGu -3'
miRNA:   3'- aguGCUUCgGUCGUGGAAGUgCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 26213 0.67 0.47528
Target:  5'- gCcCGAGGCCGaccGCACCgacaUCAaGGGCGu -3'
miRNA:   3'- aGuGCUUCGGU---CGUGGa---AGUgCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 6440 0.68 0.455008
Target:  5'- -gACGAAGCCGucuucccguGCAUCgacggcaaGCGGGCGa -3'
miRNA:   3'- agUGCUUCGGU---------CGUGGaag-----UGCCCGC- -5'
22278 5' -56.5 NC_005045.1 + 24934 0.68 0.455008
Target:  5'- gCGCGGAGucuCCAGCACCUUgACGccguugaggauGGCc -3'
miRNA:   3'- aGUGCUUC---GGUCGUGGAAgUGC-----------CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.