Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22278 | 5' | -56.5 | NC_005045.1 | + | 30480 | 0.66 | 0.593386 |
Target: 5'- -aACGAGGCCGuucugagcauGUACCgc--CGGGCGa -3' miRNA: 3'- agUGCUUCGGU----------CGUGGaaguGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 11102 | 0.66 | 0.593386 |
Target: 5'- gCACGAGGUCcccauccuGCACCUgUCGCagugGGGCc -3' miRNA: 3'- aGUGCUUCGGu-------CGUGGA-AGUG----CCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 41443 | 0.66 | 0.582321 |
Target: 5'- gUUACG--GCCAGCGagguaCUgcUCGCGGGUGu -3' miRNA: 3'- -AGUGCuuCGGUCGUg----GA--AGUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 14130 | 0.66 | 0.582321 |
Target: 5'- -gGCGGucgcaucuucccGGCgGGCACCgcCAUGGGCc -3' miRNA: 3'- agUGCU------------UCGgUCGUGGaaGUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 28500 | 0.66 | 0.571298 |
Target: 5'- cUC-CGAGGUUGGCGauaUCGCGGGCa -3' miRNA: 3'- -AGuGCUUCGGUCGUggaAGUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 10240 | 0.66 | 0.571298 |
Target: 5'- cCugGAAGgCAuGC-CCUUCAgugaggcgacCGGGCGu -3' miRNA: 3'- aGugCUUCgGU-CGuGGAAGU----------GCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 5041 | 0.66 | 0.571298 |
Target: 5'- -gACGAAGCCAuCGCCca---GGGCGa -3' miRNA: 3'- agUGCUUCGGUcGUGGaagugCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 11806 | 0.66 | 0.560327 |
Target: 5'- aCACGAGGgCGGUauucucgaugucACCg-CACGGGCc -3' miRNA: 3'- aGUGCUUCgGUCG------------UGGaaGUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 18268 | 0.66 | 0.560327 |
Target: 5'- cUugGcuGCCGGCcccgccGCCUUCGCuuccugguGGGCGa -3' miRNA: 3'- aGugCuuCGGUCG------UGGAAGUG--------CCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 12495 | 0.66 | 0.560327 |
Target: 5'- -gGCGucGCCgcuGGUGCUgaaCACGGGCGa -3' miRNA: 3'- agUGCuuCGG---UCGUGGaa-GUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 4983 | 0.66 | 0.548326 |
Target: 5'- aCGUGAAGCCAGCGCCaucCGCGccguccagucgucGGCa -3' miRNA: 3'- aGUGCUUCGGUCGUGGaa-GUGC-------------CCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 39006 | 0.66 | 0.538568 |
Target: 5'- cCACGAagaacGGCCucaccGcCACCga-GCGGGCGa -3' miRNA: 3'- aGUGCU-----UCGGu----C-GUGGaagUGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 33755 | 0.66 | 0.538568 |
Target: 5'- -aGCGGucGGCCAGgGCCUUgAUGGucgGCGg -3' miRNA: 3'- agUGCU--UCGGUCgUGGAAgUGCC---CGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 3474 | 0.67 | 0.527796 |
Target: 5'- aCACGAAgGCaCAGcCGCCUg-AUGGGCu -3' miRNA: 3'- aGUGCUU-CG-GUC-GUGGAagUGCCCGc -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 4221 | 0.67 | 0.527796 |
Target: 5'- aUCACGAguGGCCAgauGCACCcgaUCACGcauGCGu -3' miRNA: 3'- -AGUGCU--UCGGU---CGUGGa--AGUGCc--CGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 4993 | 0.67 | 0.517106 |
Target: 5'- -aGCGGA-CCAGCACCUgauagaCGCcGGCGa -3' miRNA: 3'- agUGCUUcGGUCGUGGAa-----GUGcCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 9659 | 0.67 | 0.485585 |
Target: 5'- --gUGAGGgCGGUAUCUUCAaGGGCGu -3' miRNA: 3'- aguGCUUCgGUCGUGGAAGUgCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 26213 | 0.67 | 0.47528 |
Target: 5'- gCcCGAGGCCGaccGCACCgacaUCAaGGGCGu -3' miRNA: 3'- aGuGCUUCGGU---CGUGGa---AGUgCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 6440 | 0.68 | 0.455008 |
Target: 5'- -gACGAAGCCGucuucccguGCAUCgacggcaaGCGGGCGa -3' miRNA: 3'- agUGCUUCGGU---------CGUGGaag-----UGCCCGC- -5' |
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22278 | 5' | -56.5 | NC_005045.1 | + | 24934 | 0.68 | 0.455008 |
Target: 5'- gCGCGGAGucuCCAGCACCUUgACGccguugaggauGGCc -3' miRNA: 3'- aGUGCUUC---GGUCGUGGAAgUGC-----------CCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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