Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22295 | 3' | -56.7 | NC_005045.1 | + | 35520 | 0.66 | 0.537822 |
Target: 5'- cCCUGCggcgccGCUGacgaUAUCGcCGGUGGCGgCu -3' miRNA: 3'- cGGACGa-----UGAC----GUAGC-GUCACCGCgG- -5' |
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22295 | 3' | -56.7 | NC_005045.1 | + | 37297 | 0.66 | 0.515212 |
Target: 5'- aGCCUGUgGCUgaguuugGCAcUCGCGgcagucugucGUGGCGCg -3' miRNA: 3'- -CGGACGaUGA-------CGU-AGCGU----------CACCGCGg -5' |
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22295 | 3' | -56.7 | NC_005045.1 | + | 38462 | 0.67 | 0.495094 |
Target: 5'- cGCCUGCgcCUGCcgcaucuccUCGCGGaGGCGgUCg -3' miRNA: 3'- -CGGACGauGACGu--------AGCGUCaCCGC-GG- -5' |
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22295 | 3' | -56.7 | NC_005045.1 | + | 41200 | 0.73 | 0.209383 |
Target: 5'- uGCCUGCUGCUGuCGUUGaCAGccUgugcaaccgccccGGCGCCc -3' miRNA: 3'- -CGGACGAUGAC-GUAGC-GUC--A-------------CCGCGG- -5' |
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22295 | 3' | -56.7 | NC_005045.1 | + | 41572 | 0.71 | 0.263704 |
Target: 5'- cGCCgcccagggcagugGCUGCUGCgAUCacaGCGGUGGCcuugGCCu -3' miRNA: 3'- -CGGa------------CGAUGACG-UAG---CGUCACCG----CGG- -5' |
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22295 | 3' | -56.7 | NC_005045.1 | + | 41716 | 0.67 | 0.505639 |
Target: 5'- aGCCcGCcGgUGCGguguacacgaccUCGguGaUGGCGCCg -3' miRNA: 3'- -CGGaCGaUgACGU------------AGCguC-ACCGCGG- -5' |
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22295 | 3' | -56.7 | NC_005045.1 | + | 42357 | 0.81 | 0.053251 |
Target: 5'- cUCUGCcaUGCUGCGUCGCGcUGGUGCCa -3' miRNA: 3'- cGGACG--AUGACGUAGCGUcACCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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