Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22312 | 5' | -55.9 | NC_005045.1 | + | 24136 | 0.69 | 0.427707 |
Target: 5'- cUGCGCCaUACCUgccuuaCGACGCUCGCGcagcgcagccauaUCGGc -3' miRNA: 3'- -ACGCGG-AUGGA------GUUGCGGGUGU-------------AGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 2162 | 0.69 | 0.438496 |
Target: 5'- gGCGCaaGCUaagCAGC-CCCGCGUCGAu -3' miRNA: 3'- aCGCGgaUGGa--GUUGcGGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 21077 | 0.7 | 0.34655 |
Target: 5'- gGCGCCUGCaUCGuguucgaggACGaucCCCACGUCGGc -3' miRNA: 3'- aCGCGGAUGgAGU---------UGC---GGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 10314 | 0.7 | 0.37264 |
Target: 5'- aGUGCCUGCacuucgcgguaUUCGACGCcacCCAUAUCGGc -3' miRNA: 3'- aCGCGGAUG-----------GAGUUGCG---GGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 30310 | 0.7 | 0.381629 |
Target: 5'- aGCGCCcagGCCaCGGCGCCCuGC-UCGGc -3' miRNA: 3'- aCGCGGa--UGGaGUUGCGGG-UGuAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 18879 | 0.71 | 0.338148 |
Target: 5'- cUGCGCCUGCCg---UGCCCGC-UUGGu -3' miRNA: 3'- -ACGCGGAUGGaguuGCGGGUGuAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 28726 | 0.72 | 0.269252 |
Target: 5'- gUGCGCCUG-CUCGGCGagguuCCACAUCuGAu -3' miRNA: 3'- -ACGCGGAUgGAGUUGCg----GGUGUAG-CU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 7209 | 0.73 | 0.248942 |
Target: 5'- gGCgGCCcGCCUaCGGCGCCCGCAU-GAc -3' miRNA: 3'- aCG-CGGaUGGA-GUUGCGGGUGUAgCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 31627 | 0.76 | 0.160743 |
Target: 5'- gGUGCCUACCgugggguUCGACGCCCugA-CGGg -3' miRNA: 3'- aCGCGGAUGG-------AGUUGCGGGugUaGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 10762 | 1.08 | 0.000644 |
Target: 5'- cUGCGCCUACCUCAACGCCCACAUCGAc -3' miRNA: 3'- -ACGCGGAUGGAGUUGCGGGUGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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