Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22312 | 5' | -55.9 | NC_005045.1 | + | 31030 | 0.68 | 0.489397 |
Target: 5'- gGCaCCguaCUCGGCGCCCcGCAUCGc -3' miRNA: 3'- aCGcGGaugGAGUUGCGGG-UGUAGCu -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 22559 | 0.68 | 0.478987 |
Target: 5'- -uCGCCcAUCUCGGCGUCCugguaguCAUCGAc -3' miRNA: 3'- acGCGGaUGGAGUUGCGGGu------GUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 7754 | 0.68 | 0.458503 |
Target: 5'- aGCGC--GCC-CAAUccaGCCCGCGUCGGu -3' miRNA: 3'- aCGCGgaUGGaGUUG---CGGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 41583 | 0.68 | 0.448438 |
Target: 5'- aGCGCCgcCCUCGcCGCCCAgGgcagUGGc -3' miRNA: 3'- aCGCGGauGGAGUuGCGGGUgUa---GCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 24136 | 0.69 | 0.427707 |
Target: 5'- cUGCGCCaUACCUgccuuaCGACGCUCGCGcagcgcagccauaUCGGc -3' miRNA: 3'- -ACGCGG-AUGGA------GUUGCGGGUGU-------------AGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 3288 | 0.69 | 0.409448 |
Target: 5'- gGUGCCUGCCUCAucaGCaCCCAgGUagCGGu -3' miRNA: 3'- aCGCGGAUGGAGU---UGcGGGUgUA--GCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 30310 | 0.7 | 0.381629 |
Target: 5'- aGCGCCcagGCCaCGGCGCCCuGC-UCGGc -3' miRNA: 3'- aCGCGGa--UGGaGUUGCGGG-UGuAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 18879 | 0.71 | 0.338148 |
Target: 5'- cUGCGCCUGCCg---UGCCCGC-UUGGu -3' miRNA: 3'- -ACGCGGAUGGaguuGCGGGUGuAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 28726 | 0.72 | 0.269252 |
Target: 5'- gUGCGCCUG-CUCGGCGagguuCCACAUCuGAu -3' miRNA: 3'- -ACGCGGAUgGAGUUGCg----GGUGUAG-CU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 39643 | 0.66 | 0.620554 |
Target: 5'- gUGCccaGCCUccaGCCaUCAGCGCCgGCAgguacagcUCGGg -3' miRNA: 3'- -ACG---CGGA---UGG-AGUUGCGGgUGU--------AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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