Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22321 | 5' | -53.2 | NC_005045.1 | + | 6920 | 0.68 | 0.596094 |
Target: 5'- aGGaACCUac-CAUCAGGCCGGacAGGUCGa -3' miRNA: 3'- -CC-UGGAcuaGUAGUUCGGCU--UCCGGU- -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 10799 | 0.69 | 0.57346 |
Target: 5'- aGGAgCUGGaugugcuccUCGcUCAGGCCGGuggcGGCCAc -3' miRNA: 3'- -CCUgGACU---------AGU-AGUUCGGCUu---CCGGU- -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 26820 | 0.71 | 0.47509 |
Target: 5'- gGGGCCU--UgGUgGAGCCGguGGCCAu -3' miRNA: 3'- -CCUGGAcuAgUAgUUCGGCuuCCGGU- -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 41467 | 0.71 | 0.47509 |
Target: 5'- -uACCUGGUagaagGUCAGGCCGGuguuacGGCCAg -3' miRNA: 3'- ccUGGACUAg----UAGUUCGGCUu-----CCGGU- -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 33208 | 0.71 | 0.434096 |
Target: 5'- aGGGCCgUGucagCAUCGGaCCGGAGGCCc -3' miRNA: 3'- -CCUGG-ACua--GUAGUUcGGCUUCCGGu -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 11837 | 0.71 | 0.424171 |
Target: 5'- cGGGCCUGAagcuUCAUCAacuGGCCguagaacacGAGGGCg- -3' miRNA: 3'- -CCUGGACU----AGUAGU---UCGG---------CUUCCGgu -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 32563 | 0.74 | 0.300606 |
Target: 5'- cGGCCUGA-CAggcugugcagcUCGcGCCGAAGGCCGu -3' miRNA: 3'- cCUGGACUaGU-----------AGUuCGGCUUCCGGU- -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 14394 | 0.74 | 0.292928 |
Target: 5'- cGGGCUUGA---UCGAGCCGucGGCCu -3' miRNA: 3'- -CCUGGACUaguAGUUCGGCuuCCGGu -5' |
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22321 | 5' | -53.2 | NC_005045.1 | + | 21160 | 0.66 | 0.768136 |
Target: 5'- cGGGCCgacgugggGAUCGUCcucgaacacgaugcaGGcGCCGccGGCCAa -3' miRNA: 3'- -CCUGGa-------CUAGUAG---------------UU-CGGCuuCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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