miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22328 5' -53.6 NC_005045.1 + 25759 0.66 0.716921
Target:  5'- gAUACGCcUGCAAUuCCugGGCGaUGACc -3'
miRNA:   3'- -UAUGUGaGCGUUGuGGugCCGC-GUUG- -5'
22328 5' -53.6 NC_005045.1 + 28959 0.66 0.716921
Target:  5'- cGUAgGCUCGCAgauucucgacgGCAuCCugGGUGCc-- -3'
miRNA:   3'- -UAUgUGAGCGU-----------UGU-GGugCCGCGuug -5'
22328 5' -53.6 NC_005045.1 + 3281 0.66 0.716921
Target:  5'- gGUGCAUgaCGguAUACCACGuGCGCu-- -3'
miRNA:   3'- -UAUGUGa-GCguUGUGGUGC-CGCGuug -5'
22328 5' -53.6 NC_005045.1 + 40508 0.66 0.705684
Target:  5'- -aACAa--GCccCugCGCGGCGCAGCc -3'
miRNA:   3'- uaUGUgagCGuuGugGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 14219 0.66 0.705684
Target:  5'- gAUGCAgaaGCGGC-CCAUGGCGguGCc -3'
miRNA:   3'- -UAUGUgagCGUUGuGGUGCCGCguUG- -5'
22328 5' -53.6 NC_005045.1 + 13622 0.66 0.705684
Target:  5'- -gGCGCUCGCu-CAUguaGCGG-GCAGCg -3'
miRNA:   3'- uaUGUGAGCGuuGUGg--UGCCgCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 8543 0.66 0.703427
Target:  5'- --uCACggCGCAGgGCCucgucgcucagcCGGCGCAGCu -3'
miRNA:   3'- uauGUGa-GCGUUgUGGu-----------GCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 26045 0.66 0.694368
Target:  5'- gAUGCugguggCGCAGCACCGUGGCG-AGCu -3'
miRNA:   3'- -UAUGuga---GCGUUGUGGUGCCGCgUUG- -5'
22328 5' -53.6 NC_005045.1 + 8766 0.66 0.682986
Target:  5'- aGUAcCGCUUGa---GCUGCGGCGCAAUg -3'
miRNA:   3'- -UAU-GUGAGCguugUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 30365 0.66 0.681845
Target:  5'- -gGCGCUgaacucgCGCAGgGCCugGGCcgggGCAAUg -3'
miRNA:   3'- uaUGUGA-------GCGUUgUGGugCCG----CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 5349 0.66 0.671551
Target:  5'- -cGCGCUCgGCGGCcuggaGCCGuCGGCuCAACa -3'
miRNA:   3'- uaUGUGAG-CGUUG-----UGGU-GCCGcGUUG- -5'
22328 5' -53.6 NC_005045.1 + 36192 0.66 0.671551
Target:  5'- --cCGCUUGCAgaACACCACcaUGCAGCu -3'
miRNA:   3'- uauGUGAGCGU--UGUGGUGccGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 39168 0.66 0.671551
Target:  5'- ---gAUUCGCGGgACUGCGGCGUAc- -3'
miRNA:   3'- uaugUGAGCGUUgUGGUGCCGCGUug -5'
22328 5' -53.6 NC_005045.1 + 18756 0.67 0.648571
Target:  5'- -gAUACUa-CAGCGCCAaGGCGCAGa -3'
miRNA:   3'- uaUGUGAgcGUUGUGGUgCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 25699 0.67 0.648571
Target:  5'- uGUAUAC-CGCGAgcgcaGCCugGuGCGCAAUg -3'
miRNA:   3'- -UAUGUGaGCGUUg----UGGugC-CGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 18793 0.67 0.64166
Target:  5'- gGUACGC-CGCAccaaGCACCagACcaagcgggcacggcaGGCGCAGCu -3'
miRNA:   3'- -UAUGUGaGCGU----UGUGG--UG---------------CCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 21525 0.67 0.63705
Target:  5'- -gGCACUCGaCGACGCCGgaaucaGGCGgGcACa -3'
miRNA:   3'- uaUGUGAGC-GUUGUGGUg-----CCGCgU-UG- -5'
22328 5' -53.6 NC_005045.1 + 10462 0.67 0.625524
Target:  5'- -gAgGCU-GCGG-ACCAUGGCGCGGCg -3'
miRNA:   3'- uaUgUGAgCGUUgUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 12624 0.67 0.614005
Target:  5'- --cCAUUCGCugAAUACgACGGCGaCGGCg -3'
miRNA:   3'- uauGUGAGCG--UUGUGgUGCCGC-GUUG- -5'
22328 5' -53.6 NC_005045.1 + 36145 0.67 0.614005
Target:  5'- -gGCAUUCGCGACcucaacaucgugGCCGgcccUGGCGUGACc -3'
miRNA:   3'- uaUGUGAGCGUUG------------UGGU----GCCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.