miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22328 5' -53.6 NC_005045.1 + 15462 0.69 0.479836
Target:  5'- --uCGCUCGUAcacgucCGCCACGGCccgccGCAGCg -3'
miRNA:   3'- uauGUGAGCGUu-----GUGGUGCCG-----CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 36015 0.72 0.370647
Target:  5'- -gGCACggCGCAGCGCCucauugGCGGCGuCGAg -3'
miRNA:   3'- uaUGUGa-GCGUUGUGG------UGCCGC-GUUg -5'
22328 5' -53.6 NC_005045.1 + 9390 0.72 0.361593
Target:  5'- cUACACUCucaaagaaGCGACACCguGCGGCGuCGAa -3'
miRNA:   3'- uAUGUGAG--------CGUUGUGG--UGCCGC-GUUg -5'
22328 5' -53.6 NC_005045.1 + 5349 0.66 0.671551
Target:  5'- -cGCGCUCgGCGGCcuggaGCCGuCGGCuCAACa -3'
miRNA:   3'- uaUGUGAG-CGUUG-----UGGU-GCCGcGUUG- -5'
22328 5' -53.6 NC_005045.1 + 25699 0.67 0.648571
Target:  5'- uGUAUAC-CGCGAgcgcaGCCugGuGCGCAAUg -3'
miRNA:   3'- -UAUGUGaGCGUUg----UGGugC-CGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 10462 0.67 0.625524
Target:  5'- -gAgGCU-GCGG-ACCAUGGCGCGGCg -3'
miRNA:   3'- uaUgUGAgCGUUgUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 25759 0.66 0.716921
Target:  5'- gAUACGCcUGCAAUuCCugGGCGaUGACc -3'
miRNA:   3'- -UAUGUGaGCGUUGuGGugCCGC-GUUG- -5'
22328 5' -53.6 NC_005045.1 + 8543 0.66 0.703427
Target:  5'- --uCACggCGCAGgGCCucgucgcucagcCGGCGCAGCu -3'
miRNA:   3'- uauGUGa-GCGUUgUGGu-----------GCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 8766 0.66 0.682986
Target:  5'- aGUAcCGCUUGa---GCUGCGGCGCAAUg -3'
miRNA:   3'- -UAU-GUGAGCguugUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 39168 0.66 0.671551
Target:  5'- ---gAUUCGCGGgACUGCGGCGUAc- -3'
miRNA:   3'- uaugUGAGCGUUgUGGUGCCGCGUug -5'
22328 5' -53.6 NC_005045.1 + 7383 0.68 0.555743
Target:  5'- uUGCGCUUGCuuuaGCCaggagucACGGCGCAGu -3'
miRNA:   3'- uAUGUGAGCGuug-UGG-------UGCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 14219 0.66 0.705684
Target:  5'- gAUGCAgaaGCGGC-CCAUGGCGguGCc -3'
miRNA:   3'- -UAUGUgagCGUUGuGGUGCCGCguUG- -5'
22328 5' -53.6 NC_005045.1 + 26135 0.68 0.591029
Target:  5'- --cCGCUCGuCGAacagguacagcuCGCCACGGUGCuGCg -3'
miRNA:   3'- uauGUGAGC-GUU------------GUGGUGCCGCGuUG- -5'
22328 5' -53.6 NC_005045.1 + 30365 0.66 0.681845
Target:  5'- -gGCGCUgaacucgCGCAGgGCCugGGCcgggGCAAUg -3'
miRNA:   3'- uaUGUGA-------GCGUUgUGGugCCG----CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 13622 0.66 0.705684
Target:  5'- -gGCGCUCGCu-CAUguaGCGG-GCAGCg -3'
miRNA:   3'- uaUGUGAGCGuuGUGg--UGCCgCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 24743 0.68 0.591029
Target:  5'- -aGguCUCGaCGACGCgGCGGUGCAuGCg -3'
miRNA:   3'- uaUguGAGC-GUUGUGgUGCCGCGU-UG- -5'
22328 5' -53.6 NC_005045.1 + 4045 0.7 0.448423
Target:  5'- uGUACguACUCGCucACGCCcagGCGGCGgAACc -3'
miRNA:   3'- -UAUG--UGAGCGu-UGUGG---UGCCGCgUUG- -5'
22328 5' -53.6 NC_005045.1 + 26045 0.66 0.694368
Target:  5'- gAUGCugguggCGCAGCACCGUGGCG-AGCu -3'
miRNA:   3'- -UAUGuga---GCGUUGUGGUGCCGCgUUG- -5'
22328 5' -53.6 NC_005045.1 + 36192 0.66 0.671551
Target:  5'- --cCGCUUGCAgaACACCACcaUGCAGCu -3'
miRNA:   3'- uauGUGAGCGU--UGUGGUGccGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 18756 0.67 0.648571
Target:  5'- -gAUACUa-CAGCGCCAaGGCGCAGa -3'
miRNA:   3'- uaUGUGAgcGUUGUGGUgCCGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.