miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22332 3' -53 NC_005045.1 + 41919 0.66 0.789707
Target:  5'- ----aGCUcgUCGAGGUgugCGACCAGCUCa -3'
miRNA:   3'- ccaacCGGa-AGUUCCA---GUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 19842 0.66 0.778441
Target:  5'- ---aGGgCUUCuuGGUCAggcuucgcgacagACCAGCCUu -3'
miRNA:   3'- ccaaCCgGAAGuuCCAGU-------------UGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 7109 0.66 0.758529
Target:  5'- --cUGGCCagUUCGccucgcgguGGGUgGugcuCCAGCCCa -3'
miRNA:   3'- ccaACCGG--AAGU---------UCCAgUu---GGUCGGG- -5'
22332 3' -53 NC_005045.1 + 25385 0.66 0.758529
Target:  5'- uGGUUGGauacgucucauCCaugcUCAGGGUCGG-CAGCUCg -3'
miRNA:   3'- -CCAACC-----------GGa---AGUUCCAGUUgGUCGGG- -5'
22332 3' -53 NC_005045.1 + 32410 0.66 0.758529
Target:  5'- ---cGGCCUccUCGGcGGUCAuggcuacuucuGgCAGCCCu -3'
miRNA:   3'- ccaaCCGGA--AGUU-CCAGU-----------UgGUCGGG- -5'
22332 3' -53 NC_005045.1 + 10729 0.66 0.758529
Target:  5'- ---cGGCCUgagCGAGGagCAcauCCAGCUCc -3'
miRNA:   3'- ccaaCCGGAa--GUUCCa-GUu--GGUCGGG- -5'
22332 3' -53 NC_005045.1 + 12260 0.66 0.747843
Target:  5'- ---gGGCCgugCuuGGUC-GCCAGCUCg -3'
miRNA:   3'- ccaaCCGGaa-GuuCCAGuUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 11419 0.66 0.747843
Target:  5'- --cUGGCCUaccuugccgUCAAcGUCGucacGCCAGCCg -3'
miRNA:   3'- ccaACCGGA---------AGUUcCAGU----UGGUCGGg -5'
22332 3' -53 NC_005045.1 + 29552 0.66 0.747843
Target:  5'- aGGUaGGCaugcagUUCcuGG-CGGCCAGCCUg -3'
miRNA:   3'- -CCAaCCGg-----AAGuuCCaGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 27506 0.66 0.747843
Target:  5'- ---aGGCCgccgCcuGGauguacUCAGCCGGCCCc -3'
miRNA:   3'- ccaaCCGGaa--GuuCC------AGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 24519 0.66 0.737031
Target:  5'- --cUGGCCcgUAAGuUCGACCAaGCCUg -3'
miRNA:   3'- ccaACCGGaaGUUCcAGUUGGU-CGGG- -5'
22332 3' -53 NC_005045.1 + 39051 0.67 0.726108
Target:  5'- --gUGGUCUcgaugucgUCAGGGaUCAGgaugUCAGCCCg -3'
miRNA:   3'- ccaACCGGA--------AGUUCC-AGUU----GGUCGGG- -5'
22332 3' -53 NC_005045.1 + 39390 0.67 0.726108
Target:  5'- ---aGGUCUucuUCGuuguagcgcugcGGGUCAGCC-GCCCa -3'
miRNA:   3'- ccaaCCGGA---AGU------------UCCAGUUGGuCGGG- -5'
22332 3' -53 NC_005045.1 + 10349 0.67 0.726108
Target:  5'- cGGccUUGGUCagCGGGGUCuugcgGGCCAuacGCCCg -3'
miRNA:   3'- -CC--AACCGGaaGUUCCAG-----UUGGU---CGGG- -5'
22332 3' -53 NC_005045.1 + 14854 0.67 0.726108
Target:  5'- -cUUGGCCUUCGgcuugaugaucAGGUCcucgccGCCA-CCCa -3'
miRNA:   3'- ccAACCGGAAGU-----------UCCAGu-----UGGUcGGG- -5'
22332 3' -53 NC_005045.1 + 11611 0.67 0.715083
Target:  5'- ---cGGCCUgcuGGGUacACCAGaCCCg -3'
miRNA:   3'- ccaaCCGGAaguUCCAguUGGUC-GGG- -5'
22332 3' -53 NC_005045.1 + 23235 0.67 0.70397
Target:  5'- uGUUGGCaa-CcAGGUUAGCgaGGCCCg -3'
miRNA:   3'- cCAACCGgaaGuUCCAGUUGg-UCGGG- -5'
22332 3' -53 NC_005045.1 + 40595 0.67 0.70397
Target:  5'- ---aGGCCggCGAGGgCAGCC-GCCa -3'
miRNA:   3'- ccaaCCGGaaGUUCCaGUUGGuCGGg -5'
22332 3' -53 NC_005045.1 + 18441 0.67 0.692783
Target:  5'- uGGUUGaCCUUgAAGGcCAACCGGaCUu -3'
miRNA:   3'- -CCAACcGGAAgUUCCaGUUGGUCgGG- -5'
22332 3' -53 NC_005045.1 + 33984 0.67 0.692783
Target:  5'- --aUGGCCUgugCGAuGGuaUCGGCguCAGCCCg -3'
miRNA:   3'- ccaACCGGAa--GUU-CC--AGUUG--GUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.