miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22334 3' -54.1 NC_005045.1 + 12237 0.66 0.735003
Target:  5'- --gGUGAUGGUGGGc----CAGUGCCa -3'
miRNA:   3'- ccaCGCUACCGCCUaugauGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 13404 0.66 0.735003
Target:  5'- --aGCGuagGGCgcaucuuccguuGGAUGCUGCAuCGCCc -3'
miRNA:   3'- ccaCGCua-CCG------------CCUAUGAUGUcGCGG- -5'
22334 3' -54.1 NC_005045.1 + 38663 0.66 0.735003
Target:  5'- --gGCGAUGGUcGcUGC-ACAGCGCg -3'
miRNA:   3'- ccaCGCUACCGcCuAUGaUGUCGCGg -5'
22334 3' -54.1 NC_005045.1 + 32198 0.66 0.724192
Target:  5'- uGGaUGcCGGaaccuacaucgUGGCGGGUGCUcuuGGCGCUg -3'
miRNA:   3'- -CC-AC-GCU-----------ACCGCCUAUGAug-UCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 36317 0.66 0.724192
Target:  5'- aGGUGUGGUGGCGuc----GCAGauuCGCCg -3'
miRNA:   3'- -CCACGCUACCGCcuaugaUGUC---GCGG- -5'
22334 3' -54.1 NC_005045.1 + 6205 0.66 0.717659
Target:  5'- cGG-GCGAaGGCGGcgGCUaaggacaccuggcagGCAGCaaccuucgcaGCCa -3'
miRNA:   3'- -CCaCGCUaCCGCCuaUGA---------------UGUCG----------CGG- -5'
22334 3' -54.1 NC_005045.1 + 35536 0.66 0.713286
Target:  5'- -uUGCGAaaGGCaGugcccCUGCGGCGCCg -3'
miRNA:   3'- ccACGCUa-CCGcCuau--GAUGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 21497 0.66 0.702296
Target:  5'- aGGaGCGAUGGCcGAUGCcACuGGCaCCg -3'
miRNA:   3'- -CCaCGCUACCGcCUAUGaUG-UCGcGG- -5'
22334 3' -54.1 NC_005045.1 + 37153 0.66 0.702296
Target:  5'- cGGUGC--UGGUGGAUgaggaACUGCGuGUGaCCu -3'
miRNA:   3'- -CCACGcuACCGCCUA-----UGAUGU-CGC-GG- -5'
22334 3' -54.1 NC_005045.1 + 16586 0.66 0.702296
Target:  5'- --aGCGGgauugcucGGCaGGUGCU-CGGCGCCc -3'
miRNA:   3'- ccaCGCUa-------CCGcCUAUGAuGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 2124 0.66 0.691235
Target:  5'- --gGCGAgccuUGGCGGcuuUGCguugacGCGGCGUCa -3'
miRNA:   3'- ccaCGCU----ACCGCCu--AUGa-----UGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 28495 0.66 0.691235
Target:  5'- aGGUugGCGAUaucGCGG--GCaGCGGCGCCc -3'
miRNA:   3'- -CCA--CGCUAc--CGCCuaUGaUGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 24499 0.66 0.690125
Target:  5'- uGGUGgucgaacUGGUGGCGGAggUACaGCAGgGUg -3'
miRNA:   3'- -CCAC-------GCUACCGCCU--AUGaUGUCgCGg -5'
22334 3' -54.1 NC_005045.1 + 4348 0.67 0.63527
Target:  5'- cGGUGaGAUGuauCGGGUAgUGCAGC-CCg -3'
miRNA:   3'- -CCACgCUACc--GCCUAUgAUGUCGcGG- -5'
22334 3' -54.1 NC_005045.1 + 3190 0.67 0.63527
Target:  5'- --cGCGuggGGCuGGUgaACUACAGCGaCCg -3'
miRNA:   3'- ccaCGCua-CCGcCUA--UGAUGUCGC-GG- -5'
22334 3' -54.1 NC_005045.1 + 41607 0.67 0.63527
Target:  5'- --gGCGGUGaGCGGGUccGgUGgggUAGCGCCg -3'
miRNA:   3'- ccaCGCUAC-CGCCUA--UgAU---GUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 35250 0.68 0.624024
Target:  5'- --cGCGGUGaGCGGAUACUggaaugcgaGgAGCgagGCCa -3'
miRNA:   3'- ccaCGCUAC-CGCCUAUGA---------UgUCG---CGG- -5'
22334 3' -54.1 NC_005045.1 + 15394 0.68 0.601565
Target:  5'- cGG-GCcGUGGCGGAcgugUACgagcgagGCggGGCGCCg -3'
miRNA:   3'- -CCaCGcUACCGCCU----AUGa------UG--UCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 42212 0.68 0.594844
Target:  5'- -cUGCGGUGGCGuGGcugcccaucggcucaUACc-CAGCGCCc -3'
miRNA:   3'- ccACGCUACCGC-CU---------------AUGauGUCGCGG- -5'
22334 3' -54.1 NC_005045.1 + 149 0.68 0.594844
Target:  5'- -cUGCGGUGGCGuGGcugcccaucggcucaUACc-CAGCGCCc -3'
miRNA:   3'- ccACGCUACCGC-CU---------------AUGauGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.