Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 15386 | 0.66 | 0.692344 |
Target: 5'- cGCuGCgGCGGGCCguGGCggacguguacgagCGAGGCGGg -3' miRNA: 3'- -CGuCG-UGUUCGG--CCGaua----------GCUCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 14940 | 0.67 | 0.668946 |
Target: 5'- uGCGGgAC-AGCCGGUacagcaGGGGCGGc -3' miRNA: 3'- -CGUCgUGuUCGGCCGauag--CUCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 14820 | 0.66 | 0.702296 |
Target: 5'- gGUAGCAaccuGCCGGCagugcccaacGUCGcGGCGGa -3' miRNA: 3'- -CGUCGUguu-CGGCCGa---------UAGCuCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 14405 | 0.66 | 0.702296 |
Target: 5'- aCGGaACAGGCCgGGCUugAUCGAGccguCGGc -3' miRNA: 3'- cGUCgUGUUCGG-CCGA--UAGCUCu---GCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 13014 | 0.67 | 0.63527 |
Target: 5'- uCGGCGCAGuaCGGCg--CGAGuGCGGc -3' miRNA: 3'- cGUCGUGUUcgGCCGauaGCUC-UGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 12774 | 0.66 | 0.722018 |
Target: 5'- cGCGGCu---GCCGGCUuccggGUCGuccucguccuucGACGGg -3' miRNA: 3'- -CGUCGuguuCGGCCGA-----UAGCu-----------CUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 12442 | 0.66 | 0.691235 |
Target: 5'- aGCGGCGacgcccucaAGGCUcuggagaaacagGGCU-UCGAGGCGGc -3' miRNA: 3'- -CGUCGUg--------UUCGG------------CCGAuAGCUCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 12032 | 0.67 | 0.63527 |
Target: 5'- uGCGGUACAagGGCCGGgUGcCGuacgaAGAUGGc -3' miRNA: 3'- -CGUCGUGU--UCGGCCgAUaGC-----UCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 10598 | 0.71 | 0.411845 |
Target: 5'- -aAGCGCAAGCCGGagAUCaccguuGACGGg -3' miRNA: 3'- cgUCGUGUUCGGCCgaUAGcu----CUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 10465 | 0.69 | 0.557047 |
Target: 5'- aGCcGCACAAuccuGCCGuuCUAUgGAGGCGGu -3' miRNA: 3'- -CGuCGUGUU----CGGCc-GAUAgCUCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 9883 | 0.69 | 0.513522 |
Target: 5'- -aGGCGCGGGCCGcCU-UCGGGGuCGGg -3' miRNA: 3'- cgUCGUGUUCGGCcGAuAGCUCU-GCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 6962 | 0.66 | 0.702296 |
Target: 5'- gGCcGC-CGAGCUGGCUGgugcCGAGAUc- -3' miRNA: 3'- -CGuCGuGUUCGGCCGAUa---GCUCUGcc -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 6182 | 0.7 | 0.49228 |
Target: 5'- -aGGCugAGGCCgaGGCUcgUGAG-CGGg -3' miRNA: 3'- cgUCGugUUCGG--CCGAuaGCUCuGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 6045 | 0.72 | 0.374793 |
Target: 5'- gGUAGgucaACGGGCCGGCcugUAUUGGGACGa -3' miRNA: 3'- -CGUCg---UGUUCGGCCG---AUAGCUCUGCc -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 5917 | 0.66 | 0.702296 |
Target: 5'- uGCccuGCGCGAuGCCGGaaua-GAGAUGGa -3' miRNA: 3'- -CGu--CGUGUU-CGGCCgauagCUCUGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 5901 | 0.69 | 0.557047 |
Target: 5'- gGCGGacaGCGGGCCGGCcuucuUCGAuaccaGCGGg -3' miRNA: 3'- -CGUCg--UGUUCGGCCGau---AGCUc----UGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 5021 | 0.66 | 0.724192 |
Target: 5'- aGCAGCuu-GGCCGGUgcgcUGUCGcugaaGCGGa -3' miRNA: 3'- -CGUCGuguUCGGCCG----AUAGCuc---UGCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 3076 | 0.68 | 0.612786 |
Target: 5'- aGCAGCACGucgaAGCCuucGgaGUCGAGAucaCGGc -3' miRNA: 3'- -CGUCGUGU----UCGGc--CgaUAGCUCU---GCC- -5' |
|||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 1047 | 0.74 | 0.285051 |
Target: 5'- cGCGGCACAAGCCauaGGCgcaaGGGACa- -3' miRNA: 3'- -CGUCGUGUUCGG---CCGauagCUCUGcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home