miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22339 3' -54.1 NC_005045.1 + 41296 0.74 0.285051
Target:  5'- aCAGCAC-AGCgGGCgc-CGGGGCGGu -3'
miRNA:   3'- cGUCGUGuUCGgCCGauaGCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 41249 0.72 0.374793
Target:  5'- aGCAgGCACAGGCCGGUcagcccaCG-GGCGGu -3'
miRNA:   3'- -CGU-CGUGUUCGGCCGaua----GCuCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 40454 0.74 0.285051
Target:  5'- cGCAGCACAgaGGCUGGCgaucUCGuaGGGCGa -3'
miRNA:   3'- -CGUCGUGU--UCGGCCGau--AGC--UCUGCc -5'
22339 3' -54.1 NC_005045.1 + 37746 0.7 0.461208
Target:  5'- aGUGGCAC--GCCGaGCUAcUCGaAGACGGc -3'
miRNA:   3'- -CGUCGUGuuCGGC-CGAU-AGC-UCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 34455 0.67 0.680115
Target:  5'- cGCGGCACGuuGCCGGUgaaGUCcccgaAGACGc -3'
miRNA:   3'- -CGUCGUGUu-CGGCCGa--UAGc----UCUGCc -5'
22339 3' -54.1 NC_005045.1 + 30775 0.75 0.263715
Target:  5'- aGCAGCACAAGCCGcaUGUCGAagGACu- -3'
miRNA:   3'- -CGUCGUGUUCGGCcgAUAGCU--CUGcc -5'
22339 3' -54.1 NC_005045.1 + 30097 0.71 0.431202
Target:  5'- -aGGCGCAGGCCGaGCUGcguacccugcaCGAGGCGa -3'
miRNA:   3'- cgUCGUGUUCGGC-CGAUa----------GCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 26745 0.66 0.728529
Target:  5'- gGCAGCA-AGGCCGGCagguccgccguagcAUUGAGGCu- -3'
miRNA:   3'- -CGUCGUgUUCGGCCGa-------------UAGCUCUGcc -5'
22339 3' -54.1 NC_005045.1 + 26531 0.71 0.431202
Target:  5'- cGCGGCAaccauAGCCGGCUAccucaaccaaCGGGGCGu -3'
miRNA:   3'- -CGUCGUgu---UCGGCCGAUa---------GCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 26243 0.66 0.724192
Target:  5'- cGUAGaccccaACAAgGCCGGCUgguuguacAUCaAGGCGGg -3'
miRNA:   3'- -CGUCg-----UGUU-CGGCCGA--------UAGcUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 26056 0.68 0.56478
Target:  5'- cGCAGCACcguGgCGaGCUGUaccuguucgacgagCGGGACGGu -3'
miRNA:   3'- -CGUCGUGuu-CgGC-CGAUA--------------GCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 23486 0.7 0.49228
Target:  5'- cGCAGCcgGCGgagcuaccggGGCCGGCUGagCGGGugcuuGCGGa -3'
miRNA:   3'- -CGUCG--UGU----------UCGGCCGAUa-GCUC-----UGCC- -5'
22339 3' -54.1 NC_005045.1 + 22817 1.14 0.000469
Target:  5'- aGCAGCACAAGCCGGCUAUCGAGACGGg -3'
miRNA:   3'- -CGUCGUGUUCGGCCGAUAGCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 21939 0.66 0.723106
Target:  5'- aGCAGuCACuucGGuaaugucugugucCCGGCUGUCGGccucgcGGCGGa -3'
miRNA:   3'- -CGUC-GUGu--UC-------------GGCCGAUAGCU------CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 21644 0.69 0.557047
Target:  5'- gGCAGCguggaGC-AGCgGGCUAUCGAGuuCGc -3'
miRNA:   3'- -CGUCG-----UGuUCGgCCGAUAGCUCu-GCc -5'
22339 3' -54.1 NC_005045.1 + 20796 0.7 0.471453
Target:  5'- cCAGUucCAGGCCGGUcggCGAGACGu -3'
miRNA:   3'- cGUCGu-GUUCGGCCGauaGCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 20096 0.74 0.292459
Target:  5'- cCGGCuGCGGGCCgaGGCUGUCGAGuACGu -3'
miRNA:   3'- cGUCG-UGUUCGG--CCGAUAGCUC-UGCc -5'
22339 3' -54.1 NC_005045.1 + 19584 0.67 0.657742
Target:  5'- cCAGCACuacUCGGCUAUucucCGGGACGa -3'
miRNA:   3'- cGUCGUGuucGGCCGAUA----GCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 18265 0.66 0.724192
Target:  5'- cGCAGUcauggcgcuGCGGGCUgGGCUGUCGAuGCu- -3'
miRNA:   3'- -CGUCG---------UGUUCGG-CCGAUAGCUcUGcc -5'
22339 3' -54.1 NC_005045.1 + 18030 0.7 0.49228
Target:  5'- aGCAGCAgAucGCCcacgaagaGGCccuUGUCGGGGCGGc -3'
miRNA:   3'- -CGUCGUgUu-CGG--------CCG---AUAGCUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.