Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 42450 | 0.66 | 0.267555 |
Target: 5'- uGUCGGguGGUgGUGCGGGagu-GGCu -3' miRNA: 3'- gCAGUCguCCGgCGCGUCCggguCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 23853 | 0.66 | 0.267555 |
Target: 5'- gGUCGGCugauGGaCuCGgGCGauGCCCAGGCc -3' miRNA: 3'- gCAGUCGu---CC-G-GCgCGUc-CGGGUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 387 | 0.66 | 0.267555 |
Target: 5'- uGUCGGguGGUgGUGCGGGagu-GGCu -3' miRNA: 3'- gCAGUCguCCGgCGCGUCCggguCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 41235 | 0.66 | 0.260995 |
Target: 5'- gGUCAGCccacGGGCgGUuCuGGUCCAGGg -3' miRNA: 3'- gCAGUCG----UCCGgCGcGuCCGGGUCCg -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 29030 | 0.66 | 0.260346 |
Target: 5'- aCGUgCAGCAGGaaguuCUGCGCGGugagcguGCCCGuauGGCc -3' miRNA: 3'- -GCA-GUCGUCC-----GGCGCGUC-------CGGGU---CCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 5498 | 0.66 | 0.254566 |
Target: 5'- gGUCAGCAGGCauaCcCAGGCCaugauGGUu -3' miRNA: 3'- gCAGUCGUCCGgc-GcGUCCGGgu---CCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 20302 | 0.66 | 0.254566 |
Target: 5'- -aUCGGgAuauccuccGCUGCGCAGGCCaGGGCg -3' miRNA: 3'- gcAGUCgUc-------CGGCGCGUCCGGgUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 39342 | 0.66 | 0.250771 |
Target: 5'- cCGUCG--AGGCCcuugccgguGCGCGGGUuguggccuuucuccuCCAGGCg -3' miRNA: 3'- -GCAGUcgUCCGG---------CGCGUCCG---------------GGUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 23133 | 0.66 | 0.248267 |
Target: 5'- --cCAGCaAGGUCuccuGCGC-GGCCUGGGCc -3' miRNA: 3'- gcaGUCG-UCCGG----CGCGuCCGGGUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 4204 | 0.66 | 0.247645 |
Target: 5'- aCGUgCAGUAGGCCG---GGGCCUacugaccGGGCu -3' miRNA: 3'- -GCA-GUCGUCCGGCgcgUCCGGG-------UCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 9697 | 0.66 | 0.234865 |
Target: 5'- gCGUCGGCGuacucgguacuccaGCCaccgucccggacgaaGCGCGGGUCCAGGg -3' miRNA: 3'- -GCAGUCGUc-------------CGG---------------CGCGUCCGGGUCCg -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 5837 | 0.67 | 0.230144 |
Target: 5'- uCGUCGGCGcGCuuCGCGUcGGCCU-GGCa -3' miRNA: 3'- -GCAGUCGUcCG--GCGCGuCCGGGuCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 15897 | 0.67 | 0.223783 |
Target: 5'- cCGcCAGCGGGUUuuguuugaucuugGCGUAGGCuuCCAGGa -3' miRNA: 3'- -GCaGUCGUCCGG-------------CGCGUCCG--GGUCCg -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 9907 | 0.67 | 0.21315 |
Target: 5'- aCGUCcuuguGCAGGUaCGCaccCAGGCgCGGGCc -3' miRNA: 3'- -GCAGu----CGUCCG-GCGc--GUCCGgGUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 26936 | 0.67 | 0.207729 |
Target: 5'- uGUCGGUA-GCCucaucccaGCGCAGGgCCAguGGCa -3' miRNA: 3'- gCAGUCGUcCGG--------CGCGUCCgGGU--CCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 18572 | 0.67 | 0.202428 |
Target: 5'- cCGUCGGCAGGUCGauuCGuGCCUcuucGGGCa -3' miRNA: 3'- -GCAGUCGUCCGGCgc-GUcCGGG----UCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 30243 | 0.67 | 0.202428 |
Target: 5'- ---gAGCAGGgCGC-CGuGGCCUGGGCg -3' miRNA: 3'- gcagUCGUCCgGCGcGU-CCGGGUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 20087 | 0.68 | 0.192178 |
Target: 5'- aGU--GCGGGuCCGgcUGCGGGCCgAGGCu -3' miRNA: 3'- gCAguCGUCC-GGC--GCGUCCGGgUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 28526 | 0.68 | 0.182386 |
Target: 5'- aGcCGGC-GGaaGCGCcgAGGCUCAGGCc -3' miRNA: 3'- gCaGUCGuCCggCGCG--UCCGGGUCCG- -5' |
|||||||
22340 | 3' | -63.5 | NC_005045.1 | + | 7869 | 0.68 | 0.182386 |
Target: 5'- uGUCGGUcugaacgguacaAGGCUGCGCgacAGGCUgGcGGCg -3' miRNA: 3'- gCAGUCG------------UCCGGCGCG---UCCGGgU-CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home