Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22341 | 5' | -56.5 | NC_005045.1 | + | 40148 | 0.66 | 0.589513 |
Target: 5'- -uCCUUcGGCAGuGAGCCUCGGucGGUGg -3' miRNA: 3'- guGGGA-CCGUCcUUUGGAGCUu-CCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 20995 | 0.66 | 0.578446 |
Target: 5'- aGCCCUGGaAGcGAugcuuGACaguaUCGAGGGCa -3' miRNA: 3'- gUGGGACCgUC-CU-----UUGg---AGCUUCCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 20227 | 0.66 | 0.578446 |
Target: 5'- cCGCCCUGGCcugcgcagcggAGGAuauCC-CGAuccAGGCc -3' miRNA: 3'- -GUGGGACCG-----------UCCUuu-GGaGCU---UCCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 36830 | 0.66 | 0.566325 |
Target: 5'- --aCCUGGCGcuGGAAGCCaUGAguuccaaGGGCGu -3' miRNA: 3'- gugGGACCGU--CCUUUGGaGCU-------UCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 6226 | 0.66 | 0.566325 |
Target: 5'- gACaCCUGGCAGGcagcAACCuucgcagccaccaUCGccGGCGg -3' miRNA: 3'- gUG-GGACCGUCCu---UUGG-------------AGCuuCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 26074 | 0.66 | 0.556457 |
Target: 5'- cCACCgaGGUucgugugguagAGGAAcgGCCUCGGccaGGGCu -3' miRNA: 3'- -GUGGgaCCG-----------UCCUU--UGGAGCU---UCCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 25935 | 0.66 | 0.556457 |
Target: 5'- gGCCC-GGCAGGcg--CUCGAAGGgCa -3' miRNA: 3'- gUGGGaCCGUCCuuugGAGCUUCC-Gc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 4523 | 0.66 | 0.549906 |
Target: 5'- uCACCUUGGCAGG--GCCgUCGucauggauaaccacGGGCa -3' miRNA: 3'- -GUGGGACCGUCCuuUGG-AGCu-------------UCCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 9479 | 0.66 | 0.545552 |
Target: 5'- uCGCCCUGGCcgguGGGuucccucgcGACCUCaugcauGGCGc -3' miRNA: 3'- -GUGGGACCGu---CCU---------UUGGAGcuu---CCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 29459 | 0.67 | 0.523958 |
Target: 5'- uUACCCUgGGUAcGGAAGCCaCGGGcGGCc -3' miRNA: 3'- -GUGGGA-CCGU-CCUUUGGaGCUU-CCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 12520 | 0.67 | 0.513283 |
Target: 5'- aGCCCUGuuucucCAG--AGCCUUGAGGGCGu -3' miRNA: 3'- gUGGGACc-----GUCcuUUGGAGCUUCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 41176 | 0.67 | 0.49221 |
Target: 5'- -gUCCUGGCAGcGAccuCCUUGAcguGGCGc -3' miRNA: 3'- guGGGACCGUC-CUuu-GGAGCUu--CCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 17892 | 0.67 | 0.471544 |
Target: 5'- -cUCCUcGGuCAGGGccACCUCGgcGGCGg -3' miRNA: 3'- guGGGA-CC-GUCCUu-UGGAGCuuCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 12449 | 0.68 | 0.460367 |
Target: 5'- aCGCCCUcaaGGCucuGGAGaaacaggGCUUCGA-GGCGg -3' miRNA: 3'- -GUGGGA---CCGu--CCUU-------UGGAGCUuCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 6936 | 0.68 | 0.455333 |
Target: 5'- cCACCUacuacgaGGCAGGAAccuACCaucaggccggacaggUCGAAGGCa -3' miRNA: 3'- -GUGGGa------CCGUCCUU---UGG---------------AGCUUCCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 15097 | 0.68 | 0.451328 |
Target: 5'- -uUCCUGGCAGGAcuACCcgagcaguUCGAccgcagcauggcAGGCGg -3' miRNA: 3'- guGGGACCGUCCUu-UGG--------AGCU------------UCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 32643 | 0.68 | 0.451328 |
Target: 5'- cCACCUUGGCGGcGAugcCCUgGAGcGGCu -3' miRNA: 3'- -GUGGGACCGUC-CUuu-GGAgCUU-CCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 35833 | 0.68 | 0.431595 |
Target: 5'- uGCCCUGGCuGaacugcguguccGGGACCUgGGcAGGCGu -3' miRNA: 3'- gUGGGACCGuC------------CUUUGGAgCU-UCCGC- -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 23977 | 0.69 | 0.412376 |
Target: 5'- uGCCCUGGCAGcucuguccgcuGAGcaauACCgagCGGAGGUa -3' miRNA: 3'- gUGGGACCGUC-----------CUU----UGGa--GCUUCCGc -5' |
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22341 | 5' | -56.5 | NC_005045.1 | + | 30893 | 0.69 | 0.402967 |
Target: 5'- uGCCgCUGGUGcGGucguaCUCGAAGGCGa -3' miRNA: 3'- gUGG-GACCGU-CCuuug-GAGCUUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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