miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22341 5' -56.5 NC_005045.1 + 40148 0.66 0.589513
Target:  5'- -uCCUUcGGCAGuGAGCCUCGGucGGUGg -3'
miRNA:   3'- guGGGA-CCGUCcUUUGGAGCUu-CCGC- -5'
22341 5' -56.5 NC_005045.1 + 20995 0.66 0.578446
Target:  5'- aGCCCUGGaAGcGAugcuuGACaguaUCGAGGGCa -3'
miRNA:   3'- gUGGGACCgUC-CU-----UUGg---AGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 20227 0.66 0.578446
Target:  5'- cCGCCCUGGCcugcgcagcggAGGAuauCC-CGAuccAGGCc -3'
miRNA:   3'- -GUGGGACCG-----------UCCUuu-GGaGCU---UCCGc -5'
22341 5' -56.5 NC_005045.1 + 36830 0.66 0.566325
Target:  5'- --aCCUGGCGcuGGAAGCCaUGAguuccaaGGGCGu -3'
miRNA:   3'- gugGGACCGU--CCUUUGGaGCU-------UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 6226 0.66 0.566325
Target:  5'- gACaCCUGGCAGGcagcAACCuucgcagccaccaUCGccGGCGg -3'
miRNA:   3'- gUG-GGACCGUCCu---UUGG-------------AGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 26074 0.66 0.556457
Target:  5'- cCACCgaGGUucgugugguagAGGAAcgGCCUCGGccaGGGCu -3'
miRNA:   3'- -GUGGgaCCG-----------UCCUU--UGGAGCU---UCCGc -5'
22341 5' -56.5 NC_005045.1 + 25935 0.66 0.556457
Target:  5'- gGCCC-GGCAGGcg--CUCGAAGGgCa -3'
miRNA:   3'- gUGGGaCCGUCCuuugGAGCUUCC-Gc -5'
22341 5' -56.5 NC_005045.1 + 4523 0.66 0.549906
Target:  5'- uCACCUUGGCAGG--GCCgUCGucauggauaaccacGGGCa -3'
miRNA:   3'- -GUGGGACCGUCCuuUGG-AGCu-------------UCCGc -5'
22341 5' -56.5 NC_005045.1 + 9479 0.66 0.545552
Target:  5'- uCGCCCUGGCcgguGGGuucccucgcGACCUCaugcauGGCGc -3'
miRNA:   3'- -GUGGGACCGu---CCU---------UUGGAGcuu---CCGC- -5'
22341 5' -56.5 NC_005045.1 + 29459 0.67 0.523958
Target:  5'- uUACCCUgGGUAcGGAAGCCaCGGGcGGCc -3'
miRNA:   3'- -GUGGGA-CCGU-CCUUUGGaGCUU-CCGc -5'
22341 5' -56.5 NC_005045.1 + 12520 0.67 0.513283
Target:  5'- aGCCCUGuuucucCAG--AGCCUUGAGGGCGu -3'
miRNA:   3'- gUGGGACc-----GUCcuUUGGAGCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 41176 0.67 0.49221
Target:  5'- -gUCCUGGCAGcGAccuCCUUGAcguGGCGc -3'
miRNA:   3'- guGGGACCGUC-CUuu-GGAGCUu--CCGC- -5'
22341 5' -56.5 NC_005045.1 + 17892 0.67 0.471544
Target:  5'- -cUCCUcGGuCAGGGccACCUCGgcGGCGg -3'
miRNA:   3'- guGGGA-CC-GUCCUu-UGGAGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 12449 0.68 0.460367
Target:  5'- aCGCCCUcaaGGCucuGGAGaaacaggGCUUCGA-GGCGg -3'
miRNA:   3'- -GUGGGA---CCGu--CCUU-------UGGAGCUuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 6936 0.68 0.455333
Target:  5'- cCACCUacuacgaGGCAGGAAccuACCaucaggccggacaggUCGAAGGCa -3'
miRNA:   3'- -GUGGGa------CCGUCCUU---UGG---------------AGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 15097 0.68 0.451328
Target:  5'- -uUCCUGGCAGGAcuACCcgagcaguUCGAccgcagcauggcAGGCGg -3'
miRNA:   3'- guGGGACCGUCCUu-UGG--------AGCU------------UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 32643 0.68 0.451328
Target:  5'- cCACCUUGGCGGcGAugcCCUgGAGcGGCu -3'
miRNA:   3'- -GUGGGACCGUC-CUuu-GGAgCUU-CCGc -5'
22341 5' -56.5 NC_005045.1 + 35833 0.68 0.431595
Target:  5'- uGCCCUGGCuGaacugcguguccGGGACCUgGGcAGGCGu -3'
miRNA:   3'- gUGGGACCGuC------------CUUUGGAgCU-UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 23977 0.69 0.412376
Target:  5'- uGCCCUGGCAGcucuguccgcuGAGcaauACCgagCGGAGGUa -3'
miRNA:   3'- gUGGGACCGUC-----------CUU----UGGa--GCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 30893 0.69 0.402967
Target:  5'- uGCCgCUGGUGcGGucguaCUCGAAGGCGa -3'
miRNA:   3'- gUGG-GACCGU-CCuuug-GAGCUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.