miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22357 3' -55.6 NC_005045.1 + 29886 1.1 0.000439
Target:  5'- cCAACGCAUGCAGGGCAUCAUGGCGGCc -3'
miRNA:   3'- -GUUGCGUACGUCCCGUAGUACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 29356 0.77 0.118571
Target:  5'- cCAGCGCcUGUAGGGCAUCGuUGG-GGUu -3'
miRNA:   3'- -GUUGCGuACGUCCCGUAGU-ACCgCCG- -5'
22357 3' -55.6 NC_005045.1 + 5456 0.72 0.258228
Target:  5'- gCGGCGCucuuGUGCcucguGGGCAUCAUGcGCaGCg -3'
miRNA:   3'- -GUUGCG----UACGu----CCCGUAGUAC-CGcCG- -5'
22357 3' -55.6 NC_005045.1 + 32420 0.7 0.341469
Target:  5'- --cCGCGUGCGGcGGCcuccucggcgGUCAUGGCuacuucuGGCa -3'
miRNA:   3'- guuGCGUACGUC-CCG----------UAGUACCG-------CCG- -5'
22357 3' -55.6 NC_005045.1 + 30236 0.7 0.342316
Target:  5'- gGAgGCcgaGCAGGGCGcCGUGGCcugGGCg -3'
miRNA:   3'- gUUgCGua-CGUCCCGUaGUACCG---CCG- -5'
22357 3' -55.6 NC_005045.1 + 34364 0.69 0.386589
Target:  5'- aCGGgGCAacUGCGGGGCGUCuucgGGgacuucacCGGCa -3'
miRNA:   3'- -GUUgCGU--ACGUCCCGUAGua--CC--------GCCG- -5'
22357 3' -55.6 NC_005045.1 + 39193 0.69 0.386589
Target:  5'- gGACGa--GCAGGcGCGUUAUGGCgacuGGCu -3'
miRNA:   3'- gUUGCguaCGUCC-CGUAGUACCG----CCG- -5'
22357 3' -55.6 NC_005045.1 + 20285 0.69 0.405324
Target:  5'- -uGCGCAgGcCAGGGCGgUCAgucccaGGUGGCu -3'
miRNA:   3'- guUGCGUaC-GUCCCGU-AGUa-----CCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 36293 0.69 0.405324
Target:  5'- aCGACuaAUGCGuGGCAUUaucgcagguGUGGUGGCg -3'
miRNA:   3'- -GUUGcgUACGUcCCGUAG---------UACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 20918 0.69 0.41394
Target:  5'- uUAGCGCAacuccacUGCGauGGCGUCucGGCGGCg -3'
miRNA:   3'- -GUUGCGU-------ACGUc-CCGUAGuaCCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 884 0.69 0.434474
Target:  5'- gAGCGCccugGCgAGGGUAUUgacacgugGGCGGCa -3'
miRNA:   3'- gUUGCGua--CG-UCCCGUAGua------CCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 4536 0.69 0.438451
Target:  5'- gGACGCGgaccggucaccuugGCAGGGCcgucGUCAUGGauaaccacgGGCa -3'
miRNA:   3'- gUUGCGUa-------------CGUCCCG----UAGUACCg--------CCG- -5'
22357 3' -55.6 NC_005045.1 + 36029 0.68 0.485621
Target:  5'- uCGGCGaagccCAGGGCAcggcgcagcgccUCAuUGGCGGCg -3'
miRNA:   3'- -GUUGCguac-GUCCCGU------------AGU-ACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 26043 0.67 0.506873
Target:  5'- gCGAUGC-UGguGGcGCAgcacCGUGGCGaGCu -3'
miRNA:   3'- -GUUGCGuACguCC-CGUa---GUACCGC-CG- -5'
22357 3' -55.6 NC_005045.1 + 14227 0.67 0.517648
Target:  5'- uCGAUGUagAUGCAGaagcGGCc-CAUGGCGGUg -3'
miRNA:   3'- -GUUGCG--UACGUC----CCGuaGUACCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 18594 0.67 0.517648
Target:  5'- cCAAcCGCuucaCAGGGCGg---GGCGGCa -3'
miRNA:   3'- -GUU-GCGuac-GUCCCGUaguaCCGCCG- -5'
22357 3' -55.6 NC_005045.1 + 9456 0.67 0.528513
Target:  5'- uGAUGCAcgGCccaacgAGGGCGUCGcccUGGcCGGUg -3'
miRNA:   3'- gUUGCGUa-CG------UCCCGUAGU---ACC-GCCG- -5'
22357 3' -55.6 NC_005045.1 + 33527 0.67 0.539461
Target:  5'- gAugGCugaGCAGGGCGU--UGGCcugacGGCa -3'
miRNA:   3'- gUugCGua-CGUCCCGUAguACCG-----CCG- -5'
22357 3' -55.6 NC_005045.1 + 32192 0.67 0.539461
Target:  5'- cCGACGUggAUGCcGGaaccuaCAUCGUGGCGGg -3'
miRNA:   3'- -GUUGCG--UACGuCCc-----GUAGUACCGCCg -5'
22357 3' -55.6 NC_005045.1 + 26721 0.67 0.539461
Target:  5'- ---gGUGUGgGGGuGCAguUCAUGGaCGGCg -3'
miRNA:   3'- guugCGUACgUCC-CGU--AGUACC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.