Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22357 | 3' | -55.6 | NC_005045.1 | + | 884 | 0.69 | 0.434474 |
Target: 5'- gAGCGCccugGCgAGGGUAUUgacacgugGGCGGCa -3' miRNA: 3'- gUUGCGua--CG-UCCCGUAGua------CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 2524 | 0.66 | 0.617759 |
Target: 5'- cCAGCGCAuUGCGGcGGCugcCAUuaGGCauGGCu -3' miRNA: 3'- -GUUGCGU-ACGUC-CCGua-GUA--CCG--CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 4141 | 0.66 | 0.606456 |
Target: 5'- gGACGCAUGCgugaucGGGuGCAUC-UGGCc-- -3' miRNA: 3'- gUUGCGUACG------UCC-CGUAGuACCGccg -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 4536 | 0.69 | 0.438451 |
Target: 5'- gGACGCGgaccggucaccuugGCAGGGCcgucGUCAUGGauaaccacgGGCa -3' miRNA: 3'- gUUGCGUa-------------CGUCCCG----UAGUACCg--------CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 5456 | 0.72 | 0.258228 |
Target: 5'- gCGGCGCucuuGUGCcucguGGGCAUCAUGcGCaGCg -3' miRNA: 3'- -GUUGCG----UACGu----CCCGUAGUAC-CGcCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 6462 | 0.66 | 0.572728 |
Target: 5'- uCGACgGCAaGCGggcgaccuGGGaCAagGUGGCGGCg -3' miRNA: 3'- -GUUG-CGUaCGU--------CCC-GUagUACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 9456 | 0.67 | 0.528513 |
Target: 5'- uGAUGCAcgGCccaacgAGGGCGUCGcccUGGcCGGUg -3' miRNA: 3'- gUUGCGUa-CG------UCCCGUAGU---ACC-GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 9650 | 0.66 | 0.617759 |
Target: 5'- cCGACGCAgGUgAGGGCGguaucuUCAagGGCGuGCu -3' miRNA: 3'- -GUUGCGUaCG-UCCCGU------AGUa-CCGC-CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 12446 | 0.66 | 0.606456 |
Target: 5'- gCGACGCccucaagGCucuggagaaacAGGGCuUCGaGGCGGCc -3' miRNA: 3'- -GUUGCGua-----CG-----------UCCCGuAGUaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 14227 | 0.67 | 0.517648 |
Target: 5'- uCGAUGUagAUGCAGaagcGGCc-CAUGGCGGUg -3' miRNA: 3'- -GUUGCG--UACGUC----CCGuaGUACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 16687 | 0.66 | 0.583931 |
Target: 5'- cCGGCGCcgu--GGGCAaCGUGGuCGGCc -3' miRNA: 3'- -GUUGCGuacguCCCGUaGUACC-GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 18594 | 0.67 | 0.517648 |
Target: 5'- cCAAcCGCuucaCAGGGCGg---GGCGGCa -3' miRNA: 3'- -GUU-GCGuac-GUCCCGUaguaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 19854 | 0.66 | 0.583931 |
Target: 5'- cCAGCGuCAUaCAGGGCuUCuUGGUcaGGCu -3' miRNA: 3'- -GUUGC-GUAcGUCCCGuAGuACCG--CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 20285 | 0.69 | 0.405324 |
Target: 5'- -uGCGCAgGcCAGGGCGgUCAgucccaGGUGGCu -3' miRNA: 3'- guUGCGUaC-GUCCCGU-AGUa-----CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 20918 | 0.69 | 0.41394 |
Target: 5'- uUAGCGCAacuccacUGCGauGGCGUCucGGCGGCg -3' miRNA: 3'- -GUUGCGU-------ACGUc-CCGUAGuaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 23855 | 0.66 | 0.582809 |
Target: 5'- aGACGCcgGCAGccugcuucaggacGGCcUCAccaccgacGGCGGCa -3' miRNA: 3'- gUUGCGuaCGUC-------------CCGuAGUa-------CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 24727 | 0.67 | 0.550484 |
Target: 5'- gCggUGCAUGCGGacgaucuugucGGCAgcuugCuUGGCGGUc -3' miRNA: 3'- -GuuGCGUACGUC-----------CCGUa----GuACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26043 | 0.67 | 0.506873 |
Target: 5'- gCGAUGC-UGguGGcGCAgcacCGUGGCGaGCu -3' miRNA: 3'- -GUUGCGuACguCC-CGUa---GUACCGC-CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26561 | 0.66 | 0.606456 |
Target: 5'- aCGGgGCGUGCAGGacggguacaucGCAUucCGUGGCGacGCc -3' miRNA: 3'- -GUUgCGUACGUCC-----------CGUA--GUACCGC--CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26721 | 0.67 | 0.539461 |
Target: 5'- ---gGUGUGgGGGuGCAguUCAUGGaCGGCg -3' miRNA: 3'- guugCGUACgUCC-CGU--AGUACC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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