Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22357 | 3' | -55.6 | NC_005045.1 | + | 29886 | 1.1 | 0.000439 |
Target: 5'- cCAACGCAUGCAGGGCAUCAUGGCGGCc -3' miRNA: 3'- -GUUGCGUACGUCCCGUAGUACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 32192 | 0.67 | 0.539461 |
Target: 5'- cCGACGUggAUGCcGGaaccuaCAUCGUGGCGGg -3' miRNA: 3'- -GUUGCG--UACGuCCc-----GUAGUACCGCCg -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 6462 | 0.66 | 0.572728 |
Target: 5'- uCGACgGCAaGCGggcgaccuGGGaCAagGUGGCGGCg -3' miRNA: 3'- -GUUG-CGUaCGU--------CCC-GUagUACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 16687 | 0.66 | 0.583931 |
Target: 5'- cCGGCGCcgu--GGGCAaCGUGGuCGGCc -3' miRNA: 3'- -GUUGCGuacguCCCGUaGUACC-GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 4141 | 0.66 | 0.606456 |
Target: 5'- gGACGCAUGCgugaucGGGuGCAUC-UGGCc-- -3' miRNA: 3'- gUUGCGUACG------UCC-CGUAGuACCGccg -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 12446 | 0.66 | 0.606456 |
Target: 5'- gCGACGCccucaagGCucuggagaaacAGGGCuUCGaGGCGGCc -3' miRNA: 3'- -GUUGCGua-----CG-----------UCCCGuAGUaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26561 | 0.66 | 0.606456 |
Target: 5'- aCGGgGCGUGCAGGacggguacaucGCAUucCGUGGCGacGCc -3' miRNA: 3'- -GUUgCGUACGUCC-----------CGUA--GUACCGC--CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 32575 | 0.66 | 0.606456 |
Target: 5'- --cCGCuc-CAGGGCAUCGccgccaaGGUGGCu -3' miRNA: 3'- guuGCGuacGUCCCGUAGUa------CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 9650 | 0.66 | 0.617759 |
Target: 5'- cCGACGCAgGUgAGGGCGguaucuUCAagGGCGuGCu -3' miRNA: 3'- -GUUGCGUaCG-UCCCGU------AGUa-CCGC-CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 33527 | 0.67 | 0.539461 |
Target: 5'- gAugGCugaGCAGGGCGU--UGGCcugacGGCa -3' miRNA: 3'- gUugCGua-CGUCCCGUAguACCG-----CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26721 | 0.67 | 0.539461 |
Target: 5'- ---gGUGUGgGGGuGCAguUCAUGGaCGGCg -3' miRNA: 3'- guugCGUACgUCC-CGU--AGUACC-GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 30236 | 0.7 | 0.342316 |
Target: 5'- gGAgGCcgaGCAGGGCGcCGUGGCcugGGCg -3' miRNA: 3'- gUUgCGua-CGUCCCGUaGUACCG---CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 39193 | 0.69 | 0.386589 |
Target: 5'- gGACGa--GCAGGcGCGUUAUGGCgacuGGCu -3' miRNA: 3'- gUUGCguaCGUCC-CGUAGUACCG----CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 34364 | 0.69 | 0.386589 |
Target: 5'- aCGGgGCAacUGCGGGGCGUCuucgGGgacuucacCGGCa -3' miRNA: 3'- -GUUgCGU--ACGUCCCGUAGua--CC--------GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 36293 | 0.69 | 0.405324 |
Target: 5'- aCGACuaAUGCGuGGCAUUaucgcagguGUGGUGGCg -3' miRNA: 3'- -GUUGcgUACGUcCCGUAG---------UACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 884 | 0.69 | 0.434474 |
Target: 5'- gAGCGCccugGCgAGGGUAUUgacacgugGGCGGCa -3' miRNA: 3'- gUUGCGua--CG-UCCCGUAGua------CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26043 | 0.67 | 0.506873 |
Target: 5'- gCGAUGC-UGguGGcGCAgcacCGUGGCGaGCu -3' miRNA: 3'- -GUUGCGuACguCC-CGUa---GUACCGC-CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 18594 | 0.67 | 0.517648 |
Target: 5'- cCAAcCGCuucaCAGGGCGg---GGCGGCa -3' miRNA: 3'- -GUU-GCGuac-GUCCCGUaguaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 9456 | 0.67 | 0.528513 |
Target: 5'- uGAUGCAcgGCccaacgAGGGCGUCGcccUGGcCGGUg -3' miRNA: 3'- gUUGCGUa-CG------UCCCGUAGU---ACC-GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 2524 | 0.66 | 0.617759 |
Target: 5'- cCAGCGCAuUGCGGcGGCugcCAUuaGGCauGGCu -3' miRNA: 3'- -GUUGCGU-ACGUC-CCGua-GUA--CCG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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