Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22357 | 3' | -55.6 | NC_005045.1 | + | 32420 | 0.7 | 0.341469 |
Target: 5'- --cCGCGUGCGGcGGCcuccucggcgGUCAUGGCuacuucuGGCa -3' miRNA: 3'- guuGCGUACGUC-CCG----------UAGUACCG-------CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 29356 | 0.77 | 0.118571 |
Target: 5'- cCAGCGCcUGUAGGGCAUCGuUGG-GGUu -3' miRNA: 3'- -GUUGCGuACGUCCCGUAGU-ACCgCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 23855 | 0.66 | 0.582809 |
Target: 5'- aGACGCcgGCAGccugcuucaggacGGCcUCAccaccgacGGCGGCa -3' miRNA: 3'- gUUGCGuaCGUC-------------CCGuAGUa-------CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 29991 | 0.66 | 0.577204 |
Target: 5'- cCAGCGUGUGUAGGGCGuugaugucccccgcuUCcagGGCcGCc -3' miRNA: 3'- -GUUGCGUACGUCCCGU---------------AGua-CCGcCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 14227 | 0.67 | 0.517648 |
Target: 5'- uCGAUGUagAUGCAGaagcGGCc-CAUGGCGGUg -3' miRNA: 3'- -GUUGCG--UACGUC----CCGuaGUACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 36029 | 0.68 | 0.485621 |
Target: 5'- uCGGCGaagccCAGGGCAcggcgcagcgccUCAuUGGCGGCg -3' miRNA: 3'- -GUUGCguac-GUCCCGU------------AGU-ACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 29939 | 0.66 | 0.605327 |
Target: 5'- --cUGCAUGCGuuGGGCAuugcccaggccggUCAUGGCcuuGGUc -3' miRNA: 3'- guuGCGUACGU--CCCGU-------------AGUACCG---CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 32690 | 0.66 | 0.595177 |
Target: 5'- gAACGCGguacgcugccccagGCccuccagggucuugAGGGUGUCAgccaccuUGGCGGCg -3' miRNA: 3'- gUUGCGUa-------------CG--------------UCCCGUAGU-------ACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 24727 | 0.67 | 0.550484 |
Target: 5'- gCggUGCAUGCGGacgaucuugucGGCAgcuugCuUGGCGGUc -3' miRNA: 3'- -GuuGCGUACGUC-----------CCGUa----GuACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 4536 | 0.69 | 0.438451 |
Target: 5'- gGACGCGgaccggucaccuugGCAGGGCcgucGUCAUGGauaaccacgGGCa -3' miRNA: 3'- gUUGCGUa-------------CGUCCCG----UAGUACCg--------CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 20285 | 0.69 | 0.405324 |
Target: 5'- -uGCGCAgGcCAGGGCGgUCAgucccaGGUGGCu -3' miRNA: 3'- guUGCGUaC-GUCCCGU-AGUa-----CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 34576 | 0.66 | 0.617759 |
Target: 5'- aGACGCccugccGguGGGcCAUCGUGGCcaGCu -3' miRNA: 3'- gUUGCGua----CguCCC-GUAGUACCGc-CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 20918 | 0.69 | 0.41394 |
Target: 5'- uUAGCGCAacuccacUGCGauGGCGUCucGGCGGCg -3' miRNA: 3'- -GUUGCGU-------ACGUc-CCGUAGuaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 19854 | 0.66 | 0.583931 |
Target: 5'- cCAGCGuCAUaCAGGGCuUCuUGGUcaGGCu -3' miRNA: 3'- -GUUGC-GUAcGUCCCGuAGuACCG--CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 2524 | 0.66 | 0.617759 |
Target: 5'- cCAGCGCAuUGCGGcGGCugcCAUuaGGCauGGCu -3' miRNA: 3'- -GUUGCGU-ACGUC-CCGua-GUA--CCG--CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 5456 | 0.72 | 0.258228 |
Target: 5'- gCGGCGCucuuGUGCcucguGGGCAUCAUGcGCaGCg -3' miRNA: 3'- -GUUGCG----UACGu----CCCGUAGUAC-CGcCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 4141 | 0.66 | 0.606456 |
Target: 5'- gGACGCAUGCgugaucGGGuGCAUC-UGGCc-- -3' miRNA: 3'- gUUGCGUACG------UCC-CGUAGuACCGccg -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 16687 | 0.66 | 0.583931 |
Target: 5'- cCGGCGCcgu--GGGCAaCGUGGuCGGCc -3' miRNA: 3'- -GUUGCGuacguCCCGUaGUACC-GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 6462 | 0.66 | 0.572728 |
Target: 5'- uCGACgGCAaGCGggcgaccuGGGaCAagGUGGCGGCg -3' miRNA: 3'- -GUUG-CGUaCGU--------CCC-GUagUACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 32192 | 0.67 | 0.539461 |
Target: 5'- cCGACGUggAUGCcGGaaccuaCAUCGUGGCGGg -3' miRNA: 3'- -GUUGCG--UACGuCCc-----GUAGUACCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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