miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22358	3'	-57.7	NC_005045.1	+	9071	0.72	0.236625
	Target:  5'- gGUGCGgUuCUGGUCCUugCGC-UGGCc -3' miRNA:   3'- -CGCGCgGuGACUAGGAugGCGcACCG- -5'
22358	3'	-57.7	NC_005045.1	+	22661	0.72	0.236624
	Target:  5'- aGCGCGUCACUGccgaggaaGUCCgcaucACUGCGgaagaGGCa -3' miRNA:   3'- -CGCGCGGUGAC--------UAGGa----UGGCGCa----CCG- -5'
22358	3'	-57.7	NC_005045.1	+	37385	0.72	0.213073
	Target:  5'- aGCGCGCCACgacagaCUGCCGCGaGuGCc -3' miRNA:   3'- -CGCGCGGUGacuag-GAUGGCGCaC-CG- -5'
22358	3'	-57.7	NC_005045.1	+	24274	0.73	0.20207
	Target:  5'- uCGCaCCGCUGAugaacaUCCgcgACCuGCGUGGCu -3' miRNA:   3'- cGCGcGGUGACU------AGGa--UGG-CGCACCG- -5'
22358	3'	-57.7	NC_005045.1	+	626	0.73	0.196756
	Target:  5'- uGUGCuGCCGCUGGUCCUGCUGUcuuGCc -3' miRNA:   3'- -CGCG-CGGUGACUAGGAUGGCGcacCG- -5'
22358	3'	-57.7	NC_005045.1	+	35517	0.73	0.186493
	Target:  5'- uGCgGCGCCGCUGAcgaUAUCGCcgGUGGCg -3' miRNA:   3'- -CG-CGCGGUGACUaggAUGGCG--CACCG- -5'
22358	3'	-57.7	NC_005045.1	+	30687	1.14	0.000191
	Target:  5'- aGCGCGCCACUGAUCCUACCGCGUGGCa -3' miRNA:   3'- -CGCGCGGUGACUAGGAUGGCGCACCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home