miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22361 3' -54.9 NC_005045.1 + 37043 0.66 0.675173
Target:  5'- aGGuUC-CUUcCAAGGccaguCCCugGCCGAGGu -3'
miRNA:   3'- -CCuAGuGGA-GUUCU-----GGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 870 0.66 0.686152
Target:  5'- gGGAagGCCcCAGGgagcGCCCugG-CGAGGg -3'
miRNA:   3'- -CCUagUGGaGUUC----UGGGugCgGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 23587 0.66 0.697078
Target:  5'- cGGGUCGCCuUCGAGGuuUCC-UGCC-AGGg -3'
miRNA:   3'- -CCUAGUGG-AGUUCU--GGGuGCGGcUCC- -5'
22361 3' -54.9 NC_005045.1 + 19488 0.66 0.718729
Target:  5'- cGGAUaguUCUCcGGGCCUuCGgCGAGGg -3'
miRNA:   3'- -CCUAgu-GGAGuUCUGGGuGCgGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 5609 0.66 0.707941
Target:  5'- gGGGUCACCU-GGGAgCCgguACGCUGAa- -3'
miRNA:   3'- -CCUAGUGGAgUUCUgGG---UGCGGCUcc -5'
22361 3' -54.9 NC_005045.1 + 41838 0.66 0.685056
Target:  5'- cGGAUCAgguUCUCGauGGugCCggcgaagGCGCgGAGGu -3'
miRNA:   3'- -CCUAGU---GGAGU--UCugGG-------UGCGgCUCC- -5'
22361 3' -54.9 NC_005045.1 + 8603 0.67 0.642032
Target:  5'- cGGcgUACaugaAGGGCcuCCACGCCGGGGc -3'
miRNA:   3'- -CCuaGUGgag-UUCUG--GGUGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 16495 0.67 0.642032
Target:  5'- uGGAgcuggGCCUCAAGAaggGCGCCGAGc -3'
miRNA:   3'- -CCUag---UGGAGUUCUgggUGCGGCUCc -5'
22361 3' -54.9 NC_005045.1 + 20381 0.67 0.649783
Target:  5'- ---aCAgCUCGGGguggaagcuaccccGCCC-CGCCGAGGa -3'
miRNA:   3'- ccuaGUgGAGUUC--------------UGGGuGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 29752 0.67 0.653102
Target:  5'- cGGGUgGCCaacggugccaUCAcAGACCU-CGCUGAGGu -3'
miRNA:   3'- -CCUAgUGG----------AGU-UCUGGGuGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 1686 0.67 0.664153
Target:  5'- -uGUC-CCUUGAGGCCCuucCaCCGAGGg -3'
miRNA:   3'- ccUAGuGGAGUUCUGGGu--GcGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 41119 0.67 0.664153
Target:  5'- aGGUCGCUgcCAGGACCaacacccaGCGCCagGAGGu -3'
miRNA:   3'- cCUAGUGGa-GUUCUGGg-------UGCGG--CUCC- -5'
22361 3' -54.9 NC_005045.1 + 31371 0.67 0.619875
Target:  5'- aGGAUCGCaaCAAGgaaGCCUucgAgGCCGGGGu -3'
miRNA:   3'- -CCUAGUGgaGUUC---UGGG---UgCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 40074 0.67 0.608807
Target:  5'- -cAUCACCaccgacCGAGGCUCACuGCCGaAGGa -3'
miRNA:   3'- ccUAGUGGa-----GUUCUGGGUG-CGGC-UCC- -5'
22361 3' -54.9 NC_005045.1 + 25966 0.67 0.664153
Target:  5'- uGGccCACCUgcugcauacCGAccaGCCCugGCCGAGGc -3'
miRNA:   3'- -CCuaGUGGA---------GUUc--UGGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 24792 0.67 0.630953
Target:  5'- gGGGUCAggcCCUCGgaguAGACCgCAuCGCCcAGGu -3'
miRNA:   3'- -CCUAGU---GGAGU----UCUGG-GU-GCGGcUCC- -5'
22361 3' -54.9 NC_005045.1 + 32604 0.68 0.597761
Target:  5'- uGA-CAcCCUCAAGACCCugGagggcCUGGGGc -3'
miRNA:   3'- cCUaGU-GGAGUUCUGGGugC-----GGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 30356 0.68 0.586743
Target:  5'- --cUCGCg-CAGGGCCUggGCCGGGGc -3'
miRNA:   3'- ccuAGUGgaGUUCUGGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 18242 0.68 0.553957
Target:  5'- cGGAUCAUCgacgccCAGGACCUcgcagucaugGCGCUGcGGg -3'
miRNA:   3'- -CCUAGUGGa-----GUUCUGGG----------UGCGGCuCC- -5'
22361 3' -54.9 NC_005045.1 + 35945 0.69 0.532399
Target:  5'- cGGAUCGCgUCGAGuACgC-CGUCGAGa -3'
miRNA:   3'- -CCUAGUGgAGUUC-UGgGuGCGGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.