miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22361 3' -54.9 NC_005045.1 + 25966 0.67 0.664153
Target:  5'- uGGccCACCUgcugcauacCGAccaGCCCugGCCGAGGc -3'
miRNA:   3'- -CCuaGUGGA---------GUUc--UGGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 40074 0.67 0.608807
Target:  5'- -cAUCACCaccgacCGAGGCUCACuGCCGaAGGa -3'
miRNA:   3'- ccUAGUGGa-----GUUCUGGGUG-CGGC-UCC- -5'
22361 3' -54.9 NC_005045.1 + 31371 0.67 0.619875
Target:  5'- aGGAUCGCaaCAAGgaaGCCUucgAgGCCGGGGu -3'
miRNA:   3'- -CCUAGUGgaGUUC---UGGG---UgCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 8603 0.67 0.642032
Target:  5'- cGGcgUACaugaAGGGCcuCCACGCCGGGGc -3'
miRNA:   3'- -CCuaGUGgag-UUCUG--GGUGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 16495 0.67 0.642032
Target:  5'- uGGAgcuggGCCUCAAGAaggGCGCCGAGc -3'
miRNA:   3'- -CCUag---UGGAGUUCUgggUGCGGCUCc -5'
22361 3' -54.9 NC_005045.1 + 20381 0.67 0.649783
Target:  5'- ---aCAgCUCGGGguggaagcuaccccGCCC-CGCCGAGGa -3'
miRNA:   3'- ccuaGUgGAGUUC--------------UGGGuGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 29752 0.67 0.653102
Target:  5'- cGGGUgGCCaacggugccaUCAcAGACCU-CGCUGAGGu -3'
miRNA:   3'- -CCUAgUGG----------AGU-UCUGGGuGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 1686 0.67 0.664153
Target:  5'- -uGUC-CCUUGAGGCCCuucCaCCGAGGg -3'
miRNA:   3'- ccUAGuGGAGUUCUGGGu--GcGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 41119 0.67 0.664153
Target:  5'- aGGUCGCUgcCAGGACCaacacccaGCGCCagGAGGu -3'
miRNA:   3'- cCUAGUGGa-GUUCUGGg-------UGCGG--CUCC- -5'
22361 3' -54.9 NC_005045.1 + 32604 0.68 0.597761
Target:  5'- uGA-CAcCCUCAAGACCCugGagggcCUGGGGc -3'
miRNA:   3'- cCUaGU-GGAGUUCUGGGugC-----GGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 18242 0.68 0.553957
Target:  5'- cGGAUCAUCgacgccCAGGACCUcgcagucaugGCGCUGcGGg -3'
miRNA:   3'- -CCUAGUGGa-----GUUCUGGG----------UGCGGCuCC- -5'
22361 3' -54.9 NC_005045.1 + 21846 0.69 0.532399
Target:  5'- cGAUcCGCCgCGAGGCCgACaGCCGGGa -3'
miRNA:   3'- cCUA-GUGGaGUUCUGGgUG-CGGCUCc -5'
22361 3' -54.9 NC_005045.1 + 30016 0.76 0.197826
Target:  5'- cGGAUCGCCUCGugcAGgguacgcagcucgGCCUGCGCCuGGGGa -3'
miRNA:   3'- -CCUAGUGGAGU---UC-------------UGGGUGCGG-CUCC- -5'
22361 3' -54.9 NC_005045.1 + 11083 0.72 0.340436
Target:  5'- uGGGUCGCCUgGAGua-CAUGCaCGAGGu -3'
miRNA:   3'- -CCUAGUGGAgUUCuggGUGCG-GCUCC- -5'
22361 3' -54.9 NC_005045.1 + 24325 0.72 0.357261
Target:  5'- uGGAUCGCCU--GGGCa-ACGUCGAGGc -3'
miRNA:   3'- -CCUAGUGGAguUCUGggUGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 18036 0.72 0.36589
Target:  5'- aGAUCGCCcacgaaGAGGCCCuuGUCGGGGc -3'
miRNA:   3'- cCUAGUGGag----UUCUGGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 33689 0.71 0.383574
Target:  5'- ----gACCaUCAAGGCCCugGCCGAc- -3'
miRNA:   3'- ccuagUGG-AGUUCUGGGugCGGCUcc -5'
22361 3' -54.9 NC_005045.1 + 7517 0.71 0.401817
Target:  5'- cGGAUCaagaacGCUUCAu-GCCCugGCcCGAGGa -3'
miRNA:   3'- -CCUAG------UGGAGUucUGGGugCG-GCUCC- -5'
22361 3' -54.9 NC_005045.1 + 28532 0.71 0.420601
Target:  5'- cGGAagCGCC--GAGGCUCAgGCCGGGGc -3'
miRNA:   3'- -CCUa-GUGGagUUCUGGGUgCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 8919 0.69 0.500659
Target:  5'- gGGGUC-CCU---GGCCCAgGCCGAGc -3'
miRNA:   3'- -CCUAGuGGAguuCUGGGUgCGGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.