miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 21912 0.67 0.404134
Target:  5'- cCGGCUGUC--GGCCUcgcGGCgGAUCGCa -3'
miRNA:   3'- -GCUGGUAGuuCCGGGa--CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 22828 0.67 0.395088
Target:  5'- cCGGCUAUCGAGacgggccuucccGCCCUGucCCGcuccGCCGCu -3'
miRNA:   3'- -GCUGGUAGUUC------------CGGGACc-GGC----UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 23053 0.67 0.360235
Target:  5'- aGGCCG-CGcAGGCCCaGGCCG--CGCa -3'
miRNA:   3'- gCUGGUaGU-UCCGGGaCCGGCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 24028 0.67 0.392399
Target:  5'- -uGCCAgggCAGGuGCCgcagcacccaggggUUGGCCGGCUGCc -3'
miRNA:   3'- gcUGGUa--GUUC-CGG--------------GACCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 24335 0.69 0.269007
Target:  5'- gGGCaaCGUCGAGGCCaagGGCCGucguGCCGg -3'
miRNA:   3'- gCUG--GUAGUUCCGGga-CCGGC----UGGCg -5'
22364 3' -59.3 NC_005045.1 + 24800 0.68 0.34363
Target:  5'- gCGA-CAUCGgggucAGGCCCUcGGaguaGACCGCa -3'
miRNA:   3'- -GCUgGUAGU-----UCCGGGA-CCgg--CUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 25984 0.73 0.168172
Target:  5'- cCGACCA-----GCCCUGGCCGagGCCGUu -3'
miRNA:   3'- -GCUGGUaguucCGGGACCGGC--UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 26183 0.7 0.24303
Target:  5'- uGACCuguUCAucgccaaccugAGuguaaaGCCCgaGGCCGACCGCa -3'
miRNA:   3'- gCUGGu--AGU-----------UC------CGGGa-CCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 27407 0.66 0.441596
Target:  5'- gGGCCAUCucaugcAGGCCCaugaaacccagGGCaCGcuCCGCa -3'
miRNA:   3'- gCUGGUAGu-----UCCGGGa----------CCG-GCu-GGCG- -5'
22364 3' -59.3 NC_005045.1 + 27795 0.66 0.432046
Target:  5'- cCGugUAUCAGcuacaGCCCgUGGCCGG-CGCc -3'
miRNA:   3'- -GCugGUAGUUc----CGGG-ACCGGCUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 28686 0.66 0.413312
Target:  5'- --uCCAUCcAGGCUCaggcuaaGGCCGGCCuGCu -3'
miRNA:   3'- gcuGGUAGuUCCGGGa------CCGGCUGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 30065 0.69 0.275842
Target:  5'- gCGAuCCGUCAGGcuugaGCCgUUGGCCGcCUGCa -3'
miRNA:   3'- -GCU-GGUAGUUC-----CGG-GACCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 30238 0.7 0.26231
Target:  5'- aGGCCGagCAGGGCgCCgUGGCCuGGgCGCu -3'
miRNA:   3'- gCUGGUa-GUUCCG-GG-ACCGG-CUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 30510 0.79 0.054927
Target:  5'- gCGACCAUCGacgAGGCgaaCUGGCUGGCCaGCg -3'
miRNA:   3'- -GCUGGUAGU---UCCGg--GACCGGCUGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 30751 0.77 0.075204
Target:  5'- aGACCAUCGGaaccGUCCUGGCCGagcagcacaaGCCGCa -3'
miRNA:   3'- gCUGGUAGUUc---CGGGACCGGC----------UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 31305 0.67 0.368744
Target:  5'- uCGGCCAaccUCAca-CCCUGGUCGAgUGCg -3'
miRNA:   3'- -GCUGGU---AGUuccGGGACCGGCUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 32351 0.66 0.46105
Target:  5'- uGACCGcCGAGGa---GGCCG-CCGCa -3'
miRNA:   3'- gCUGGUaGUUCCgggaCCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 32784 0.73 0.163702
Target:  5'- gGACCAggguaUCGAGGCCCUGaGUgGAguggagucCCGCu -3'
miRNA:   3'- gCUGGU-----AGUUCCGGGAC-CGgCU--------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 33529 0.69 0.282815
Target:  5'- uGGCUgagCAGGGCgUUGGCCuGACgGCa -3'
miRNA:   3'- gCUGGua-GUUCCGgGACCGG-CUGgCG- -5'
22364 3' -59.3 NC_005045.1 + 33687 1.11 0.000219
Target:  5'- cCGACCAUCAAGGCCCUGGCCGACCGCu -3'
miRNA:   3'- -GCUGGUAGUUCCGGGACCGGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.