Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22364 | 3' | -59.3 | NC_005045.1 | + | 30751 | 0.77 | 0.075204 |
Target: 5'- aGACCAUCGGaaccGUCCUGGCCGagcagcacaaGCCGCa -3' miRNA: 3'- gCUGGUAGUUc---CGGGACCGGC----------UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 30510 | 0.79 | 0.054927 |
Target: 5'- gCGACCAUCGacgAGGCgaaCUGGCUGGCCaGCg -3' miRNA: 3'- -GCUGGUAGU---UCCGg--GACCGGCUGG-CG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 30238 | 0.7 | 0.26231 |
Target: 5'- aGGCCGagCAGGGCgCCgUGGCCuGGgCGCu -3' miRNA: 3'- gCUGGUa-GUUCCG-GG-ACCGG-CUgGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 30065 | 0.69 | 0.275842 |
Target: 5'- gCGAuCCGUCAGGcuugaGCCgUUGGCCGcCUGCa -3' miRNA: 3'- -GCU-GGUAGUUC-----CGG-GACCGGCuGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 28686 | 0.66 | 0.413312 |
Target: 5'- --uCCAUCcAGGCUCaggcuaaGGCCGGCCuGCu -3' miRNA: 3'- gcuGGUAGuUCCGGGa------CCGGCUGG-CG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 27795 | 0.66 | 0.432046 |
Target: 5'- cCGugUAUCAGcuacaGCCCgUGGCCGG-CGCc -3' miRNA: 3'- -GCugGUAGUUc----CGGG-ACCGGCUgGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 27407 | 0.66 | 0.441596 |
Target: 5'- gGGCCAUCucaugcAGGCCCaugaaacccagGGCaCGcuCCGCa -3' miRNA: 3'- gCUGGUAGu-----UCCGGGa----------CCG-GCu-GGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 26183 | 0.7 | 0.24303 |
Target: 5'- uGACCuguUCAucgccaaccugAGuguaaaGCCCgaGGCCGACCGCa -3' miRNA: 3'- gCUGGu--AGU-----------UC------CGGGa-CCGGCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 25984 | 0.73 | 0.168172 |
Target: 5'- cCGACCA-----GCCCUGGCCGagGCCGUu -3' miRNA: 3'- -GCUGGUaguucCGGGACCGGC--UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 24800 | 0.68 | 0.34363 |
Target: 5'- gCGA-CAUCGgggucAGGCCCUcGGaguaGACCGCa -3' miRNA: 3'- -GCUgGUAGU-----UCCGGGA-CCgg--CUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 24335 | 0.69 | 0.269007 |
Target: 5'- gGGCaaCGUCGAGGCCaagGGCCGucguGCCGg -3' miRNA: 3'- gCUG--GUAGUUCCGGga-CCGGC----UGGCg -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 24028 | 0.67 | 0.392399 |
Target: 5'- -uGCCAgggCAGGuGCCgcagcacccaggggUUGGCCGGCUGCc -3' miRNA: 3'- gcUGGUa--GUUC-CGG--------------GACCGGCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 23053 | 0.67 | 0.360235 |
Target: 5'- aGGCCG-CGcAGGCCCaGGCCG--CGCa -3' miRNA: 3'- gCUGGUaGU-UCCGGGaCCGGCugGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 22828 | 0.67 | 0.395088 |
Target: 5'- cCGGCUAUCGAGacgggccuucccGCCCUGucCCGcuccGCCGCu -3' miRNA: 3'- -GCUGGUAGUUC------------CGGGACc-GGC----UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 21912 | 0.67 | 0.404134 |
Target: 5'- cCGGCUGUC--GGCCUcgcGGCgGAUCGCa -3' miRNA: 3'- -GCUGGUAGuuCCGGGa--CCGgCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 18684 | 0.74 | 0.125962 |
Target: 5'- uGACCuggggcGGCCCUGGCCGgagcgugaugcuggcGCCGCc -3' miRNA: 3'- gCUGGuaguu-CCGGGACCGGC---------------UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 18314 | 0.69 | 0.269007 |
Target: 5'- uGACUG-CGAGGUCCUGGgCGucgaugauCCGCa -3' miRNA: 3'- gCUGGUaGUUCCGGGACCgGCu-------GGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 16781 | 0.68 | 0.326797 |
Target: 5'- uGuCCAggcUCAGcaccuucGGaCCCUGGCCGACCa- -3' miRNA: 3'- gCuGGU---AGUU-------CC-GGGACCGGCUGGcg -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 14068 | 0.67 | 0.368744 |
Target: 5'- uGGCCAaCAAGGCU---GCCGAgaCCGCa -3' miRNA: 3'- gCUGGUaGUUCCGGgacCGGCU--GGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 12484 | 0.69 | 0.275842 |
Target: 5'- gCGGCCAagcugUUGAuGCgCCUGGCCGAgCUGCa -3' miRNA: 3'- -GCUGGU-----AGUUcCG-GGACCGGCU-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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