miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 41472 0.77 0.079593
Target:  5'- aGGCCgauGUCAAGGCCaaGGCC-ACCGCu -3'
miRNA:   3'- gCUGG---UAGUUCCGGgaCCGGcUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41168 0.69 0.269007
Target:  5'- gGACCAgaaccGCCCgugGGCUGACCGg -3'
miRNA:   3'- gCUGGUaguucCGGGa--CCGGCUGGCg -5'
22364 3' -59.3 NC_005045.1 + 41132 0.67 0.368744
Target:  5'- aCGcACCucCAGGGCCUccgcacgGGCCGucuGCCGCu -3'
miRNA:   3'- -GC-UGGuaGUUCCGGGa------CCGGC---UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41061 0.7 0.255749
Target:  5'- aCGGCCcgUgcgGAGGCCCUGGagGugCGUu -3'
miRNA:   3'- -GCUGGuaG---UUCCGGGACCggCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 40106 0.68 0.319772
Target:  5'- aCGACCGgaUCGAuGCCCUugagGGCCuuguCCGCg -3'
miRNA:   3'- -GCUGGU--AGUUcCGGGA----CCGGcu--GGCG- -5'
22364 3' -59.3 NC_005045.1 + 39651 0.68 0.327585
Target:  5'- aCGAgCUGUCGuauGCCCUGGgCGGCaCGCu -3'
miRNA:   3'- -GCU-GGUAGUuc-CGGGACCgGCUG-GCG- -5'
22364 3' -59.3 NC_005045.1 + 39344 0.8 0.050388
Target:  5'- -uGCCGUCGAGGCCCUuGCCgGugCGCg -3'
miRNA:   3'- gcUGGUAGUUCCGGGAcCGG-CugGCG- -5'
22364 3' -59.3 NC_005045.1 + 38847 0.67 0.395088
Target:  5'- -cGCCc-CGAGGCCCgcaUGGgUGACCGUa -3'
miRNA:   3'- gcUGGuaGUUCCGGG---ACCgGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 36152 0.72 0.177441
Target:  5'- gCGACC-UCAAcaucguggccGGCCCUGGCgUGACCa- -3'
miRNA:   3'- -GCUGGuAGUU----------CCGGGACCG-GCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 35858 0.68 0.311341
Target:  5'- uCGAUgUAUCGAGgcaggaacgggauGCCCUGGCUGaACUGCg -3'
miRNA:   3'- -GCUG-GUAGUUC-------------CGGGACCGGC-UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 34897 0.67 0.360235
Target:  5'- gGGCCGcuUCAuccCCCUGcGCCGcCCGCg -3'
miRNA:   3'- gCUGGU--AGUuccGGGAC-CGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 34764 0.73 0.168172
Target:  5'- gCGAuCCAUgAAGGUguCCUGGCUGGCCa- -3'
miRNA:   3'- -GCU-GGUAgUUCCG--GGACCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 34263 0.66 0.413312
Target:  5'- -aGCCgGUCGAGGUCCcGGUCGAUCa- -3'
miRNA:   3'- gcUGG-UAGUUCCGGGaCCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 34111 0.68 0.343631
Target:  5'- -cACCGUCAAguacGGCaagGGCCGACUGUc -3'
miRNA:   3'- gcUGGUAGUU----CCGggaCCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 33750 0.71 0.219175
Target:  5'- uCGGCCA---GGGCCUugaUGGUCGGCgGCa -3'
miRNA:   3'- -GCUGGUaguUCCGGG---ACCGGCUGgCG- -5'
22364 3' -59.3 NC_005045.1 + 33687 1.11 0.000219
Target:  5'- cCGACCAUCAAGGCCCUGGCCGACCGCu -3'
miRNA:   3'- -GCUGGUAGUUCCGGGACCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 33529 0.69 0.282815
Target:  5'- uGGCUgagCAGGGCgUUGGCCuGACgGCa -3'
miRNA:   3'- gCUGGua-GUUCCGgGACCGG-CUGgCG- -5'
22364 3' -59.3 NC_005045.1 + 32784 0.73 0.163702
Target:  5'- gGACCAggguaUCGAGGCCCUGaGUgGAguggagucCCGCu -3'
miRNA:   3'- gCUGGU-----AGUUCCGGGAC-CGgCU--------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 32351 0.66 0.46105
Target:  5'- uGACCGcCGAGGa---GGCCG-CCGCa -3'
miRNA:   3'- gCUGGUaGUUCCgggaCCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 31305 0.67 0.368744
Target:  5'- uCGGCCAaccUCAca-CCCUGGUCGAgUGCg -3'
miRNA:   3'- -GCUGGU---AGUuccGGGACCGGCUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.