miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 28686 0.66 0.413312
Target:  5'- --uCCAUCcAGGCUCaggcuaaGGCCGGCCuGCu -3'
miRNA:   3'- gcuGGUAGuUCCGGGa------CCGGCUGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 7249 0.76 0.099719
Target:  5'- gGACauguUCGAGGCCCgaGGCgGGCUGCg -3'
miRNA:   3'- gCUGgu--AGUUCCGGGa-CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 38847 0.67 0.395088
Target:  5'- -cGCCc-CGAGGCCCgcaUGGgUGACCGUa -3'
miRNA:   3'- gcUGGuaGUUCCGGG---ACCgGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 22828 0.67 0.395088
Target:  5'- cCGGCUAUCGAGacgggccuucccGCCCUGucCCGcuccGCCGCu -3'
miRNA:   3'- -GCUGGUAGUUC------------CGGGACc-GGC----UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 8894 0.67 0.389722
Target:  5'- uGAUccgCAUCAAGGacuuccacgggggguCCCUGGCCcaGGCCGa -3'
miRNA:   3'- gCUG---GUAGUUCC---------------GGGACCGG--CUGGCg -5'
22364 3' -59.3 NC_005045.1 + 14068 0.67 0.368744
Target:  5'- uGGCCAaCAAGGCU---GCCGAgaCCGCa -3'
miRNA:   3'- gCUGGUaGUUCCGGgacCGGCU--GGCG- -5'
22364 3' -59.3 NC_005045.1 + 8777 0.67 0.366177
Target:  5'- gGAUCAagccgcgccuguacUCGGcGGCCCUGGguaUGACCGUg -3'
miRNA:   3'- gCUGGU--------------AGUU-CCGGGACCg--GCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 18684 0.74 0.125962
Target:  5'- uGACCuggggcGGCCCUGGCCGgagcgugaugcuggcGCCGCc -3'
miRNA:   3'- gCUGGuaguu-CCGGGACCGGC---------------UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 36152 0.72 0.177441
Target:  5'- gCGACC-UCAAcaucguggccGGCCCUGGCgUGACCa- -3'
miRNA:   3'- -GCUGGuAGUU----------CCGGGACCG-GCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 5426 0.71 0.219175
Target:  5'- -aACCAUCAuGGCCUggguaugccuGCUGACCGCa -3'
miRNA:   3'- gcUGGUAGUuCCGGGac--------CGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 26183 0.7 0.24303
Target:  5'- uGACCuguUCAucgccaaccugAGuguaaaGCCCgaGGCCGACCGCa -3'
miRNA:   3'- gCUGGu--AGU-----------UC------CGGGa-CCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41061 0.7 0.255749
Target:  5'- aCGGCCcgUgcgGAGGCCCUGGagGugCGUu -3'
miRNA:   3'- -GCUGGuaG---UUCCGGGACCggCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 30238 0.7 0.26231
Target:  5'- aGGCCGagCAGGGCgCCgUGGCCuGGgCGCu -3'
miRNA:   3'- gCUGGUa-GUUCCG-GG-ACCGG-CUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 24335 0.69 0.269007
Target:  5'- gGGCaaCGUCGAGGCCaagGGCCGucguGCCGg -3'
miRNA:   3'- gCUG--GUAGUUCCGGga-CCGGC----UGGCg -5'
22364 3' -59.3 NC_005045.1 + 9462 0.68 0.319772
Target:  5'- aCGGCCcaaCGAGggcgucGCCCUGGCCGGuggguucccUCGCg -3'
miRNA:   3'- -GCUGGua-GUUC------CGGGACCGGCU---------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 40106 0.68 0.319772
Target:  5'- aCGACCGgaUCGAuGCCCUugagGGCCuuguCCGCg -3'
miRNA:   3'- -GCUGGU--AGUUcCGGGA----CCGGcu--GGCG- -5'
22364 3' -59.3 NC_005045.1 + 39651 0.68 0.327585
Target:  5'- aCGAgCUGUCGuauGCCCUGGgCGGCaCGCu -3'
miRNA:   3'- -GCU-GGUAGUuc-CGGGACCgGCUG-GCG- -5'
22364 3' -59.3 NC_005045.1 + 34111 0.68 0.343631
Target:  5'- -cACCGUCAAguacGGCaagGGCCGACUGUc -3'
miRNA:   3'- gcUGGUAGUU----CCGggaCCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 8477 0.68 0.346907
Target:  5'- uGAgCGaCGAGGCCCUGcGCCGugagggggucaguacGCCGa -3'
miRNA:   3'- gCUgGUaGUUCCGGGAC-CGGC---------------UGGCg -5'
22364 3' -59.3 NC_005045.1 + 23053 0.67 0.360235
Target:  5'- aGGCCG-CGcAGGCCCaGGCCG--CGCa -3'
miRNA:   3'- gCUGGUaGU-UCCGGGaCCGGCugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.