miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 39344 0.8 0.050388
Target:  5'- -uGCCGUCGAGGCCCUuGCCgGugCGCg -3'
miRNA:   3'- gcUGGUAGUUCCGGGAcCGG-CugGCG- -5'
22364 3' -59.3 NC_005045.1 + 21912 0.67 0.404134
Target:  5'- cCGGCUGUC--GGCCUcgcGGCgGAUCGCa -3'
miRNA:   3'- -GCUGGUAGuuCCGGGa--CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 34263 0.66 0.413312
Target:  5'- -aGCCgGUCGAGGUCCcGGUCGAUCa- -3'
miRNA:   3'- gcUGG-UAGUUCCGGGaCCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 7284 0.66 0.441596
Target:  5'- -uGCCAggUCAugcGGGCgCCguaGGCgGGCCGCc -3'
miRNA:   3'- gcUGGU--AGU---UCCG-GGa--CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 18314 0.69 0.269007
Target:  5'- uGACUG-CGAGGUCCUGGgCGucgaugauCCGCa -3'
miRNA:   3'- gCUGGUaGUUCCGGGACCgGCu-------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 30065 0.69 0.275842
Target:  5'- gCGAuCCGUCAGGcuugaGCCgUUGGCCGcCUGCa -3'
miRNA:   3'- -GCU-GGUAGUUC-----CGG-GACCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 35858 0.68 0.311341
Target:  5'- uCGAUgUAUCGAGgcaggaacgggauGCCCUGGCUGaACUGCg -3'
miRNA:   3'- -GCUG-GUAGUUC-------------CGGGACCGGC-UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 16781 0.68 0.326797
Target:  5'- uGuCCAggcUCAGcaccuucGGaCCCUGGCCGACCa- -3'
miRNA:   3'- gCuGGU---AGUU-------CC-GGGACCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 34897 0.67 0.360235
Target:  5'- gGGCCGcuUCAuccCCCUGcGCCGcCCGCg -3'
miRNA:   3'- gCUGGU--AGUuccGGGAC-CGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 31305 0.67 0.368744
Target:  5'- uCGGCCAaccUCAca-CCCUGGUCGAgUGCg -3'
miRNA:   3'- -GCUGGU---AGUuccGGGACCGGCUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 24800 0.68 0.34363
Target:  5'- gCGA-CAUCGgggucAGGCCCUcGGaguaGACCGCa -3'
miRNA:   3'- -GCUgGUAGU-----UCCGGGA-CCgg--CUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 32784 0.73 0.163702
Target:  5'- gGACCAggguaUCGAGGCCCUGaGUgGAguggagucCCGCu -3'
miRNA:   3'- gCUGGU-----AGUUCCGGGAC-CGgCU--------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 24028 0.67 0.392399
Target:  5'- -uGCCAgggCAGGuGCCgcagcacccaggggUUGGCCGGCUGCc -3'
miRNA:   3'- gcUGGUa--GUUC-CGG--------------GACCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 34764 0.73 0.168172
Target:  5'- gCGAuCCAUgAAGGUguCCUGGCUGGCCa- -3'
miRNA:   3'- -GCU-GGUAgUUCCG--GGACCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 12111 0.68 0.327585
Target:  5'- cCGGCCAUCuucguacGGCaCCcGGCCcuuguACCGCa -3'
miRNA:   3'- -GCUGGUAGuu-----CCG-GGaCCGGc----UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 9533 0.67 0.404134
Target:  5'- cCGGCCAgggCGAcGCCCUcguugGGCCGugCa- -3'
miRNA:   3'- -GCUGGUa--GUUcCGGGA-----CCGGCugGcg -5'
22364 3' -59.3 NC_005045.1 + 27407 0.66 0.441596
Target:  5'- gGGCCAUCucaugcAGGCCCaugaaacccagGGCaCGcuCCGCa -3'
miRNA:   3'- gCUGGUAGu-----UCCGGGa----------CCG-GCu-GGCG- -5'
22364 3' -59.3 NC_005045.1 + 33750 0.71 0.219175
Target:  5'- uCGGCCA---GGGCCUugaUGGUCGGCgGCa -3'
miRNA:   3'- -GCUGGUaguUCCGGG---ACCGGCUGgCG- -5'
22364 3' -59.3 NC_005045.1 + 4278 0.69 0.282815
Target:  5'- -aGCCcgGUCAguAGGCCCcGGCCuACUGCa -3'
miRNA:   3'- gcUGG--UAGU--UCCGGGaCCGGcUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41132 0.67 0.368744
Target:  5'- aCGcACCucCAGGGCCUccgcacgGGCCGucuGCCGCu -3'
miRNA:   3'- -GC-UGGuaGUUCCGGGa------CCGGC---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.