miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 21534 0.73 0.282008
Target:  5'- -cGACGCCGGaAUCAggcggGCACAGGCg -3'
miRNA:   3'- gaCUGCGGCUaUGGUag---CGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 20842 0.71 0.379437
Target:  5'- -cGcCGCCGAgacGCCAUCGCAguGGa- -3'
miRNA:   3'- gaCuGCGGCUa--UGGUAGCGUguCCgg -5'
22365 3' -55.2 NC_005045.1 + 17308 0.7 0.416562
Target:  5'- -cGACGCCGAgccgACCAUC-CGCu-GCCc -3'
miRNA:   3'- gaCUGCGGCUa---UGGUAGcGUGucCGG- -5'
22365 3' -55.2 NC_005045.1 + 21502 0.7 0.426185
Target:  5'- -cGAUgGCCGAUGCCAcUgGCACcGGCa -3'
miRNA:   3'- gaCUG-CGGCUAUGGU-AgCGUGuCCGg -5'
22365 3' -55.2 NC_005045.1 + 40264 0.7 0.426185
Target:  5'- aUGG-GCCGggAgCGUCGCAaGGGCCg -3'
miRNA:   3'- gACUgCGGCuaUgGUAGCGUgUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 22500 0.69 0.462898
Target:  5'- -gGACGCCGAgaugggcgauuacgUGCCAggUgGCGCGGaaGCCg -3'
miRNA:   3'- gaCUGCGGCU--------------AUGGU--AgCGUGUC--CGG- -5'
22365 3' -55.2 NC_005045.1 + 6184 0.67 0.572623
Target:  5'- gCUGAgGCCGAgGCUcgUGaGCGGGCg -3'
miRNA:   3'- -GACUgCGGCUaUGGuaGCgUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 29754 0.67 0.561606
Target:  5'- -gGugGCCaacGGUGCCAucacagaccUCGCugAGGUUg -3'
miRNA:   3'- gaCugCGG---CUAUGGU---------AGCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 33200 0.68 0.539755
Target:  5'- -gGACGCCaugccgGGUuacACCAagGCuCAGGCCa -3'
miRNA:   3'- gaCUGCGG------CUA---UGGUagCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 28162 0.69 0.476188
Target:  5'- gUGGUGCCGcUGCCG--GCACGGGUCg -3'
miRNA:   3'- gACUGCGGCuAUGGUagCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 40462 0.69 0.476188
Target:  5'- -aGAUGCuCGAUAgCAUCGCGgAGcuucGCCg -3'
miRNA:   3'- gaCUGCG-GCUAUgGUAGCGUgUC----CGG- -5'
22365 3' -55.2 NC_005045.1 + 5745 0.69 0.465948
Target:  5'- -aGGCGCgGGUagcgGCCAgcuugUGC-CAGGCCg -3'
miRNA:   3'- gaCUGCGgCUA----UGGUa----GCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 254 0.71 0.361724
Target:  5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3'
miRNA:   3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 42317 0.71 0.361724
Target:  5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3'
miRNA:   3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 18812 0.71 0.344595
Target:  5'- uUGGCGCUGuaguauccGCCAUCGCACcagucguuccaGGGUCg -3'
miRNA:   3'- gACUGCGGCua------UGGUAGCGUG-----------UCCGG- -5'
22365 3' -55.2 NC_005045.1 + 35338 0.72 0.336252
Target:  5'- ----aGCCGAUGCCGUCGau--GGCCa -3'
miRNA:   3'- gacugCGGCUAUGGUAGCguguCCGG- -5'
22365 3' -55.2 NC_005045.1 + 30895 0.72 0.328057
Target:  5'- gCUGcCGCUGGUGCgGUCGUACucgaAGGCg -3'
miRNA:   3'- -GACuGCGGCUAUGgUAGCGUG----UCCGg -5'
22365 3' -55.2 NC_005045.1 + 32367 0.74 0.254251
Target:  5'- -aGGCGCCGAUACUucgggcacaugcGguugCGUugGGGCCu -3'
miRNA:   3'- gaCUGCGGCUAUGG------------Ua---GCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 5232 0.76 0.189406
Target:  5'- -aGACGCUGAcGCUA-CGCACGGuGCCg -3'
miRNA:   3'- gaCUGCGGCUaUGGUaGCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 34576 0.66 0.672929
Target:  5'- -aGACgcccuGCCGGUggGCCAUCGU---GGCCa -3'
miRNA:   3'- gaCUG-----CGGCUA--UGGUAGCGuguCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.