miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 20223 0.67 0.617107
Target:  5'- -cGAUGCCGuUGgCGUUGCGCAuggGGUCc -3'
miRNA:   3'- gaCUGCGGCuAUgGUAGCGUGU---CCGG- -5'
22365 3' -55.2 NC_005045.1 + 20842 0.71 0.379437
Target:  5'- -cGcCGCCGAgacGCCAUCGCAguGGa- -3'
miRNA:   3'- gaCuGCGGCUa--UGGUAGCGUguCCgg -5'
22365 3' -55.2 NC_005045.1 + 21188 0.66 0.639467
Target:  5'- -aGACGUac-UGCCAcugugcggucaCGCACGGGCCg -3'
miRNA:   3'- gaCUGCGgcuAUGGUa----------GCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 21460 0.66 0.639467
Target:  5'- uUGAccucacCGCCGAgaaCGUgGCGCAGGUUg -3'
miRNA:   3'- gACU------GCGGCUaugGUAgCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 21502 0.7 0.426185
Target:  5'- -cGAUgGCCGAUGCCAcUgGCACcGGCa -3'
miRNA:   3'- gaCUG-CGGCUAUGGU-AgCGUGuCCGg -5'
22365 3' -55.2 NC_005045.1 + 21534 0.73 0.282008
Target:  5'- -cGACGCCGGaAUCAggcggGCACAGGCg -3'
miRNA:   3'- gaCUGCGGCUaUGGUag---CGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 21573 0.68 0.539755
Target:  5'- -cGAgUGCCGGUGCaGUgGCAUcGGCCa -3'
miRNA:   3'- gaCU-GCGGCUAUGgUAgCGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 22020 0.66 0.639467
Target:  5'- -cGACGCCGcUACggugGUCGCAU-GGUCg -3'
miRNA:   3'- gaCUGCGGCuAUGg---UAGCGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 22411 0.66 0.6618
Target:  5'- -cGugGCCGcgACCGUaGUGCucGCCa -3'
miRNA:   3'- gaCugCGGCuaUGGUAgCGUGucCGG- -5'
22365 3' -55.2 NC_005045.1 + 22500 0.69 0.462898
Target:  5'- -gGACGCCGAgaugggcgauuacgUGCCAggUgGCGCGGaaGCCg -3'
miRNA:   3'- gaCUGCGGCU--------------AUGGU--AgCGUGUC--CGG- -5'
22365 3' -55.2 NC_005045.1 + 23232 0.66 0.650643
Target:  5'- gUGAUGCCGAacCCGgugauccaGCAgCAGGCUc -3'
miRNA:   3'- gACUGCGGCUauGGUag------CGU-GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 23346 0.67 0.613755
Target:  5'- aUGACGCCGcacUACCAgcCGguggcggugccugcCGCAGGUCa -3'
miRNA:   3'- gACUGCGGCu--AUGGUa-GC--------------GUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 23924 0.8 0.088275
Target:  5'- -aGGCuCCGGUGCCGUUGUACAGGCa -3'
miRNA:   3'- gaCUGcGGCUAUGGUAGCGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 25187 0.69 0.496994
Target:  5'- -aGGCGCCGAUACCcuucaguucgAUgGCACcagcgguauccGGGCg -3'
miRNA:   3'- gaCUGCGGCUAUGG----------UAgCGUG-----------UCCGg -5'
22365 3' -55.2 NC_005045.1 + 26174 0.66 0.67737
Target:  5'- -gGugGCCGAUGaccuguUCAUCGCcaaccugaguguaaaGCccgAGGCCg -3'
miRNA:   3'- gaCugCGGCUAU------GGUAGCG---------------UG---UCCGG- -5'
22365 3' -55.2 NC_005045.1 + 26281 0.7 0.426185
Target:  5'- uUGAUGUCGGUGCgGUCGgccuCGGGCUu -3'
miRNA:   3'- gACUGCGGCUAUGgUAGCgu--GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 27418 0.68 0.518199
Target:  5'- -gGACGgCGAcgggGCCAUCuCauGCAGGCCc -3'
miRNA:   3'- gaCUGCgGCUa---UGGUAGcG--UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 28162 0.69 0.476188
Target:  5'- gUGGUGCCGcUGCCG--GCACGGGUCg -3'
miRNA:   3'- gACUGCGGCuAUGGUagCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 29754 0.67 0.561606
Target:  5'- -gGugGCCaacGGUGCCAucacagaccUCGCugAGGUUg -3'
miRNA:   3'- gaCugCGG---CUAUGGU---------AGCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 29947 0.66 0.650643
Target:  5'- aUGAUGCCcugcAUGCguugggCAUUGCcCAGGCCg -3'
miRNA:   3'- gACUGCGGc---UAUG------GUAGCGuGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.