miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 254 0.71 0.361724
Target:  5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3'
miRNA:   3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 2872 0.67 0.58369
Target:  5'- aUGGCGCUGugcgACCAUggcuucCGCAUGGGUg -3'
miRNA:   3'- gACUGCGGCua--UGGUA------GCGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 2942 0.69 0.476188
Target:  5'- --cAUGCgGAaGCCAuggUCGCACAGcGCCa -3'
miRNA:   3'- gacUGCGgCUaUGGU---AGCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 4078 0.67 0.5948
Target:  5'- -aGGCGCCuGcUACugCAUCGCAguGGCg -3'
miRNA:   3'- gaCUGCGG-CuAUG--GUAGCGUguCCGg -5'
22365 3' -55.2 NC_005045.1 + 4127 0.66 0.632758
Target:  5'- -aGGCGCC--UGCCAgcaggccgaggcagCaGUACAGGCCg -3'
miRNA:   3'- gaCUGCGGcuAUGGUa-------------G-CGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 4455 0.67 0.5948
Target:  5'- gCUGcuACGCCGAUcACCAgugugcCGCGCuuagccucGGGCUg -3'
miRNA:   3'- -GAC--UGCGGCUA-UGGUa-----GCGUG--------UCCGG- -5'
22365 3' -55.2 NC_005045.1 + 5232 0.76 0.189406
Target:  5'- -aGACGCUGAcGCUA-CGCACGGuGCCg -3'
miRNA:   3'- gaCUGCGGCUaUGGUaGCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 5745 0.69 0.465948
Target:  5'- -aGGCGCgGGUagcgGCCAgcuugUGC-CAGGCCg -3'
miRNA:   3'- gaCUGCGgCUA----UGGUa----GCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 6184 0.67 0.572623
Target:  5'- gCUGAgGCCGAgGCUcgUGaGCGGGCg -3'
miRNA:   3'- -GACUgCGGCUaUGGuaGCgUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 6944 0.67 0.617107
Target:  5'- -cGGCGCUGA-ACUg--GUACGGGCCg -3'
miRNA:   3'- gaCUGCGGCUaUGGuagCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 6991 0.69 0.501205
Target:  5'- --aGCGCCGAUACCcugccugcugugccgGUCgucaacGCACAgGGCCu -3'
miRNA:   3'- gacUGCGGCUAUGG---------------UAG------CGUGU-CCGG- -5'
22365 3' -55.2 NC_005045.1 + 7957 0.68 0.518199
Target:  5'- aUGAuCGCCGccaGCCuGUCGCGCAG-CCu -3'
miRNA:   3'- gACU-GCGGCua-UGG-UAGCGUGUCcGG- -5'
22365 3' -55.2 NC_005045.1 + 10386 0.7 0.416562
Target:  5'- gUGGCGUCGaAUACCGcgaaGUGCAGGCa -3'
miRNA:   3'- gACUGCGGC-UAUGGUag--CGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 10464 0.67 0.572623
Target:  5'- aUGAgGCUGcggACCAUgGCGCGGcGCUc -3'
miRNA:   3'- gACUgCGGCua-UGGUAgCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 11800 0.69 0.445819
Target:  5'- -gGGCGguauucUCGAUGUCAcCGCACGGGCCg -3'
miRNA:   3'- gaCUGC------GGCUAUGGUaGCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 13287 0.67 0.561606
Target:  5'- aCUGGCGCCaguUGCCAuccggccccaucUCGCugAaGGCg -3'
miRNA:   3'- -GACUGCGGcu-AUGGU------------AGCGugU-CCGg -5'
22365 3' -55.2 NC_005045.1 + 15155 0.67 0.5948
Target:  5'- gUGACGCCGAcgGCCc-CGCcuACGuGGCUg -3'
miRNA:   3'- gACUGCGGCUa-UGGuaGCG--UGU-CCGG- -5'
22365 3' -55.2 NC_005045.1 + 17308 0.7 0.416562
Target:  5'- -cGACGCCGAgccgACCAUC-CGCu-GCCc -3'
miRNA:   3'- gaCUGCGGCUa---UGGUAGcGUGucCGG- -5'
22365 3' -55.2 NC_005045.1 + 18587 0.67 0.572623
Target:  5'- -aGGCGCaGGUagucGCCGUCG-GCAGGUCg -3'
miRNA:   3'- gaCUGCGgCUA----UGGUAGCgUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 18812 0.71 0.344595
Target:  5'- uUGGCGCUGuaguauccGCCAUCGCACcagucguuccaGGGUCg -3'
miRNA:   3'- gACUGCGGCua------UGGUAGCGUG-----------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.