Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22365 | 3' | -55.2 | NC_005045.1 | + | 33915 | 1.01 | 0.002885 |
Target: 5'- gCUGACGCCGAUACCAUC-CACAGGCCa -3' miRNA: 3'- -GACUGCGGCUAUGGUAGcGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 41286 | 0.84 | 0.049073 |
Target: 5'- -gGGCGCCGggGCgGUUGCACAGGCUg -3' miRNA: 3'- gaCUGCGGCuaUGgUAGCGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 23924 | 0.8 | 0.088275 |
Target: 5'- -aGGCuCCGGUGCCGUUGUACAGGCa -3' miRNA: 3'- gaCUGcGGCUAUGGUAGCGUGUCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 5232 | 0.76 | 0.189406 |
Target: 5'- -aGACGCUGAcGCUA-CGCACGGuGCCg -3' miRNA: 3'- gaCUGCGGCUaUGGUaGCGUGUC-CGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 32350 | 0.74 | 0.234937 |
Target: 5'- aUGAcCGCCGAggagGCCGcCGCACgcggcuucaAGGCCg -3' miRNA: 3'- gACU-GCGGCUa---UGGUaGCGUG---------UCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 32367 | 0.74 | 0.254251 |
Target: 5'- -aGGCGCCGAUACUucgggcacaugcGguugCGUugGGGCCu -3' miRNA: 3'- gaCUGCGGCUAUGG------------Ua---GCGugUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 21534 | 0.73 | 0.282008 |
Target: 5'- -cGACGCCGGaAUCAggcggGCACAGGCg -3' miRNA: 3'- gaCUGCGGCUaUGGUag---CGUGUCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 30895 | 0.72 | 0.328057 |
Target: 5'- gCUGcCGCUGGUGCgGUCGUACucgaAGGCg -3' miRNA: 3'- -GACuGCGGCUAUGgUAGCGUG----UCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 35338 | 0.72 | 0.336252 |
Target: 5'- ----aGCCGAUGCCGUCGau--GGCCa -3' miRNA: 3'- gacugCGGCUAUGGUAGCguguCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 18812 | 0.71 | 0.344595 |
Target: 5'- uUGGCGCUGuaguauccGCCAUCGCACcagucguuccaGGGUCg -3' miRNA: 3'- gACUGCGGCua------UGGUAGCGUG-----------UCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 254 | 0.71 | 0.361724 |
Target: 5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3' miRNA: 3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 42317 | 0.71 | 0.361724 |
Target: 5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3' miRNA: 3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 30367 | 0.71 | 0.379437 |
Target: 5'- uUGGCGCUGA-ACUcgCGCA-GGGCCu -3' miRNA: 3'- gACUGCGGCUaUGGuaGCGUgUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 20842 | 0.71 | 0.379437 |
Target: 5'- -cGcCGCCGAgacGCCAUCGCAguGGa- -3' miRNA: 3'- gaCuGCGGCUa--UGGUAGCGUguCCgg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 17308 | 0.7 | 0.416562 |
Target: 5'- -cGACGCCGAgccgACCAUC-CGCu-GCCc -3' miRNA: 3'- gaCUGCGGCUa---UGGUAGcGUGucCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 10386 | 0.7 | 0.416562 |
Target: 5'- gUGGCGUCGaAUACCGcgaaGUGCAGGCa -3' miRNA: 3'- gACUGCGGC-UAUGGUag--CGUGUCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 21502 | 0.7 | 0.426185 |
Target: 5'- -cGAUgGCCGAUGCCAcUgGCACcGGCa -3' miRNA: 3'- gaCUG-CGGCUAUGGU-AgCGUGuCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 40264 | 0.7 | 0.426185 |
Target: 5'- aUGG-GCCGggAgCGUCGCAaGGGCCg -3' miRNA: 3'- gACUgCGGCuaUgGUAGCGUgUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 26281 | 0.7 | 0.426185 |
Target: 5'- uUGAUGUCGGUGCgGUCGgccuCGGGCUu -3' miRNA: 3'- gACUGCGGCUAUGgUAGCgu--GUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 39757 | 0.69 | 0.445819 |
Target: 5'- -aGcCGCCGAUGCUcacgacGUggaUGUACGGGCCa -3' miRNA: 3'- gaCuGCGGCUAUGG------UA---GCGUGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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