Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22365 | 3' | -55.2 | NC_005045.1 | + | 39757 | 0.69 | 0.445819 |
Target: 5'- -aGcCGCCGAUGCUcacgacGUggaUGUACGGGCCa -3' miRNA: 3'- gaCuGCGGCUAUGG------UA---GCGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 22500 | 0.69 | 0.462898 |
Target: 5'- -gGACGCCGAgaugggcgauuacgUGCCAggUgGCGCGGaaGCCg -3' miRNA: 3'- gaCUGCGGCU--------------AUGGU--AgCGUGUC--CGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 5745 | 0.69 | 0.465948 |
Target: 5'- -aGGCGCgGGUagcgGCCAgcuugUGC-CAGGCCg -3' miRNA: 3'- gaCUGCGgCUA----UGGUa----GCGuGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 28162 | 0.69 | 0.476188 |
Target: 5'- gUGGUGCCGcUGCCG--GCACGGGUCg -3' miRNA: 3'- gACUGCGGCuAUGGUagCGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 40462 | 0.69 | 0.476188 |
Target: 5'- -aGAUGCuCGAUAgCAUCGCGgAGcuucGCCg -3' miRNA: 3'- gaCUGCG-GCUAUgGUAGCGUgUC----CGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 2942 | 0.69 | 0.476188 |
Target: 5'- --cAUGCgGAaGCCAuggUCGCACAGcGCCa -3' miRNA: 3'- gacUGCGgCUaUGGU---AGCGUGUC-CGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 25187 | 0.69 | 0.496994 |
Target: 5'- -aGGCGCCGAUACCcuucaguucgAUgGCACcagcgguauccGGGCg -3' miRNA: 3'- gaCUGCGGCUAUGG----------UAgCGUG-----------UCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 32472 | 0.69 | 0.496994 |
Target: 5'- -gGACaGCaCGGUGCCcUCGUccaGCAGGUCu -3' miRNA: 3'- gaCUG-CG-GCUAUGGuAGCG---UGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 6991 | 0.69 | 0.501205 |
Target: 5'- --aGCGCCGAUACCcugccugcugugccgGUCgucaacGCACAgGGCCu -3' miRNA: 3'- gacUGCGGCUAUGG---------------UAG------CGUGU-CCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 27418 | 0.68 | 0.518199 |
Target: 5'- -gGACGgCGAcgggGCCAUCuCauGCAGGCCc -3' miRNA: 3'- gaCUGCgGCUa---UGGUAGcG--UGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 7957 | 0.68 | 0.518199 |
Target: 5'- aUGAuCGCCGccaGCCuGUCGCGCAG-CCu -3' miRNA: 3'- gACU-GCGGCua-UGG-UAGCGUGUCcGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 34019 | 0.68 | 0.527859 |
Target: 5'- -gGAUGCCGGUagcccugucccgcGCCcgCuGCACAauGGCCu -3' miRNA: 3'- gaCUGCGGCUA-------------UGGuaG-CGUGU--CCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 21573 | 0.68 | 0.539755 |
Target: 5'- -cGAgUGCCGGUGCaGUgGCAUcGGCCa -3' miRNA: 3'- gaCU-GCGGCUAUGgUAgCGUGuCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 33200 | 0.68 | 0.539755 |
Target: 5'- -gGACGCCaugccgGGUuacACCAagGCuCAGGCCa -3' miRNA: 3'- gaCUGCGG------CUA---UGGUagCGuGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 29754 | 0.67 | 0.561606 |
Target: 5'- -gGugGCCaacGGUGCCAucacagaccUCGCugAGGUUg -3' miRNA: 3'- gaCugCGG---CUAUGGU---------AGCGugUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 13287 | 0.67 | 0.561606 |
Target: 5'- aCUGGCGCCaguUGCCAuccggccccaucUCGCugAaGGCg -3' miRNA: 3'- -GACUGCGGcu-AUGGU------------AGCGugU-CCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 18587 | 0.67 | 0.572623 |
Target: 5'- -aGGCGCaGGUagucGCCGUCG-GCAGGUCg -3' miRNA: 3'- gaCUGCGgCUA----UGGUAGCgUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 6184 | 0.67 | 0.572623 |
Target: 5'- gCUGAgGCCGAgGCUcgUGaGCGGGCg -3' miRNA: 3'- -GACUgCGGCUaUGGuaGCgUGUCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 34029 | 0.67 | 0.572623 |
Target: 5'- -aGGCGCUGGaggagGCCAaCGUguccCAGGCCa -3' miRNA: 3'- gaCUGCGGCUa----UGGUaGCGu---GUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 10464 | 0.67 | 0.572623 |
Target: 5'- aUGAgGCUGcggACCAUgGCGCGGcGCUc -3' miRNA: 3'- gACUgCGGCua-UGGUAgCGUGUC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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