miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 42317 0.71 0.361724
Target:  5'- gCUGGCGCUGGUAgcCCAcCGCAgGGcGCUg -3'
miRNA:   3'- -GACUGCGGCUAU--GGUaGCGUgUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 41470 0.67 0.617107
Target:  5'- -cGAgGCCGAUGUCAagGCcaAGGCCa -3'
miRNA:   3'- gaCUgCGGCUAUGGUagCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 41362 0.67 0.617107
Target:  5'- cCUGAUagGCCGcUACag-CGCGgauCAGGCCa -3'
miRNA:   3'- -GACUG--CGGCuAUGguaGCGU---GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 41286 0.84 0.049073
Target:  5'- -gGGCGCCGggGCgGUUGCACAGGCUg -3'
miRNA:   3'- gaCUGCGGCuaUGgUAGCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 41153 0.67 0.604826
Target:  5'- gUGGCGCUgcaaGGUGgcauaacgcaccuCCAgggccucCGCACGGGCCg -3'
miRNA:   3'- gACUGCGG----CUAU-------------GGUa------GCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 40462 0.69 0.476188
Target:  5'- -aGAUGCuCGAUAgCAUCGCGgAGcuucGCCg -3'
miRNA:   3'- gaCUGCG-GCUAUgGUAGCGUgUC----CGG- -5'
22365 3' -55.2 NC_005045.1 + 40308 0.67 0.5948
Target:  5'- aUGAUGCuCGAUACCGccacCGagGCGGGCa -3'
miRNA:   3'- gACUGCG-GCUAUGGUa---GCg-UGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 40264 0.7 0.426185
Target:  5'- aUGG-GCCGggAgCGUCGCAaGGGCCg -3'
miRNA:   3'- gACUgCGGCuaUgGUAGCGUgUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 39757 0.69 0.445819
Target:  5'- -aGcCGCCGAUGCUcacgacGUggaUGUACGGGCCa -3'
miRNA:   3'- gaCuGCGGCUAUGG------UA---GCGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 38926 0.66 0.639467
Target:  5'- -gGugGCCGAggUACgGUCaCccauGCGGGCCu -3'
miRNA:   3'- gaCugCGGCU--AUGgUAGcG----UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 35338 0.72 0.336252
Target:  5'- ----aGCCGAUGCCGUCGau--GGCCa -3'
miRNA:   3'- gacugCGGCUAUGGUAGCguguCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34576 0.66 0.672929
Target:  5'- -aGACgcccuGCCGGUggGCCAUCGU---GGCCa -3'
miRNA:   3'- gaCUG-----CGGCUA--UGGUAGCGuguCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34029 0.67 0.572623
Target:  5'- -aGGCGCUGGaggagGCCAaCGUguccCAGGCCa -3'
miRNA:   3'- gaCUGCGGCUa----UGGUaGCGu---GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34019 0.68 0.527859
Target:  5'- -gGAUGCCGGUagcccugucccgcGCCcgCuGCACAauGGCCu -3'
miRNA:   3'- gaCUGCGGCUA-------------UGGuaG-CGUGU--CCGG- -5'
22365 3' -55.2 NC_005045.1 + 33915 1.01 0.002885
Target:  5'- gCUGACGCCGAUACCAUC-CACAGGCCa -3'
miRNA:   3'- -GACUGCGGCUAUGGUAGcGUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 33857 0.66 0.650643
Target:  5'- gCUGGCccGCCGA-GCCAUCaGCG-AGGCa -3'
miRNA:   3'- -GACUG--CGGCUaUGGUAG-CGUgUCCGg -5'
22365 3' -55.2 NC_005045.1 + 33200 0.68 0.539755
Target:  5'- -gGACGCCaugccgGGUuacACCAagGCuCAGGCCa -3'
miRNA:   3'- gaCUGCGG------CUA---UGGUagCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 32472 0.69 0.496994
Target:  5'- -gGACaGCaCGGUGCCcUCGUccaGCAGGUCu -3'
miRNA:   3'- gaCUG-CG-GCUAUGGuAGCG---UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 32367 0.74 0.254251
Target:  5'- -aGGCGCCGAUACUucgggcacaugcGguugCGUugGGGCCu -3'
miRNA:   3'- gaCUGCGGCUAUGG------------Ua---GCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 32350 0.74 0.234937
Target:  5'- aUGAcCGCCGAggagGCCGcCGCACgcggcuucaAGGCCg -3'
miRNA:   3'- gACU-GCGGCUa---UGGUaGCGUG---------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.