miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22368 5' -52.3 NC_005045.1 + 22520 0.66 0.833187
Target:  5'- -cCCUuGGCCUCGUCcACGAgGUUCa -3'
miRNA:   3'- ccGGAcUUGGAGCGGuUGCUgUAAGc -5'
22368 5' -52.3 NC_005045.1 + 41289 0.66 0.833187
Target:  5'- uGGCCUGAuCCgCGCUguAGCGGCcuaUCa -3'
miRNA:   3'- -CCGGACUuGGaGCGG--UUGCUGua-AGc -5'
22368 5' -52.3 NC_005045.1 + 10510 0.66 0.833187
Target:  5'- cGGCUaccACCgCGCCAugGGC-UUCGa -3'
miRNA:   3'- -CCGGacuUGGaGCGGUugCUGuAAGC- -5'
22368 5' -52.3 NC_005045.1 + 22322 0.66 0.823851
Target:  5'- uGCCgaccugGAACCUCGCCccuGGCGAgCAcuacggUCGc -3'
miRNA:   3'- cCGGa-----CUUGGAGCGG---UUGCU-GUa-----AGC- -5'
22368 5' -52.3 NC_005045.1 + 22409 0.66 0.8143
Target:  5'- uGGCCgcgaccguaGugCUCGCCAgggGCGAgGUUCc -3'
miRNA:   3'- -CCGGac-------UugGAGCGGU---UGCUgUAAGc -5'
22368 5' -52.3 NC_005045.1 + 21602 0.66 0.8143
Target:  5'- cGCCUGuGCC-CGCCugauucCGGCGUcgUCGa -3'
miRNA:   3'- cCGGACuUGGaGCGGuu----GCUGUA--AGC- -5'
22368 5' -52.3 NC_005045.1 + 6252 0.66 0.794599
Target:  5'- aGCC---ACCaUCGCCGGCGGCG-UCGu -3'
miRNA:   3'- cCGGacuUGG-AGCGGUUGCUGUaAGC- -5'
22368 5' -52.3 NC_005045.1 + 15017 0.66 0.794599
Target:  5'- gGGCCUcGGcaguaccuaccACCggGgCGGCGACAUUCGc -3'
miRNA:   3'- -CCGGA-CU-----------UGGagCgGUUGCUGUAAGC- -5'
22368 5' -52.3 NC_005045.1 + 36953 0.67 0.774175
Target:  5'- uGCCaGGGCCUCGCUgaacuACGGCAa--- -3'
miRNA:   3'- cCGGaCUUGGAGCGGu----UGCUGUaagc -5'
22368 5' -52.3 NC_005045.1 + 33948 0.67 0.749921
Target:  5'- aGGCCaggGAugccacggaacacuGCCUCGCUGAUGGC--UCGg -3'
miRNA:   3'- -CCGGa--CU--------------UGGAGCGGUUGCUGuaAGC- -5'
22368 5' -52.3 NC_005045.1 + 31191 0.67 0.739157
Target:  5'- cGCCUGAGCaagccgcgcaguggUUCGCCGAgGACAc--- -3'
miRNA:   3'- cCGGACUUG--------------GAGCGGUUgCUGUaagc -5'
22368 5' -52.3 NC_005045.1 + 32928 0.67 0.738073
Target:  5'- uGGCCUGGGCCaccuugggacucaUCGCCccaggguuccgcagGGCaGCGUUCa -3'
miRNA:   3'- -CCGGACUUGG-------------AGCGG--------------UUGcUGUAAGc -5'
22368 5' -52.3 NC_005045.1 + 20137 0.68 0.720599
Target:  5'- aGGCCaaggacgaguUGGACCccaugcgcaaCGCCAACGGCAU-CGc -3'
miRNA:   3'- -CCGG----------ACUUGGa---------GCGGUUGCUGUAaGC- -5'
22368 5' -52.3 NC_005045.1 + 4048 0.68 0.709553
Target:  5'- cGGCCUGuacugcuGCCUCGgCCuGCuGGCAggCGc -3'
miRNA:   3'- -CCGGACu------UGGAGC-GGuUG-CUGUaaGC- -5'
22368 5' -52.3 NC_005045.1 + 5073 0.69 0.664683
Target:  5'- aGCCUGGGCU--GCCGACGACuggaCGg -3'
miRNA:   3'- cCGGACUUGGagCGGUUGCUGuaa-GC- -5'
22368 5' -52.3 NC_005045.1 + 33902 0.69 0.653355
Target:  5'- uGGCCUGGACCggGCUGACGcCGa--- -3'
miRNA:   3'- -CCGGACUUGGagCGGUUGCuGUaagc -5'
22368 5' -52.3 NC_005045.1 + 35864 0.69 0.642005
Target:  5'- -aCCgcGAACCUCGCUcucGACGGCGUacUCGa -3'
miRNA:   3'- ccGGa-CUUGGAGCGG---UUGCUGUA--AGC- -5'
22368 5' -52.3 NC_005045.1 + 3928 0.69 0.642005
Target:  5'- gGGCCUGAaguuGCCa-GCaCAAUGACGccUUCGa -3'
miRNA:   3'- -CCGGACU----UGGagCG-GUUGCUGU--AAGC- -5'
22368 5' -52.3 NC_005045.1 + 33276 0.7 0.607943
Target:  5'- uGGCCUGAGCCUUGgUGuaaccCGGCAUggCGu -3'
miRNA:   3'- -CCGGACUUGGAGCgGUu----GCUGUAa-GC- -5'
22368 5' -52.3 NC_005045.1 + 25070 0.7 0.59662
Target:  5'- uGGCCUGGACCggCGCCAcuugGGCGgugaUCa -3'
miRNA:   3'- -CCGGACUUGGa-GCGGUug--CUGUa---AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.