Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 39495 | 0.7 | 0.562881 |
|
Target: 5'- uGGCCUGGGCU--GCCGACGAgCGcUUCa -3' miRNA: 3'- -CCGGACUUGGagCGGUUGCU-GU-AAGc -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 28744 | 0.71 | 0.548413 |
|
Target: 5'- aGCCUGAGCCUggauggagugcgccUGCuCGGCGAgGUUCc -3' miRNA: 3'- cCGGACUUGGA--------------GCG-GUUGCUgUAAGc -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 33160 | 0.71 | 0.54067 |
|
Target: 5'- cGGcCCUGAGCCgCGUCcuGGCGGCGUcCGa -3' miRNA: 3'- -CC-GGACUUGGaGCGG--UUGCUGUAaGC- -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 14244 | 0.71 | 0.518761 |
|
Target: 5'- cGCCUGGGCUUCGCacuguggGGCGACGUg-- -3' miRNA: 3'- cCGGACUUGGAGCGg------UUGCUGUAagc -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 28595 | 0.71 | 0.507939 |
|
Target: 5'- cGGCCUGAGCCUCGgcgcuuCCGcCGGCuagCa -3' miRNA: 3'- -CCGGACUUGGAGC------GGUuGCUGuaaGc -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 29886 | 0.72 | 0.497212 |
|
Target: 5'- uGGCCUGAGCaUCGCUccAGCGGCccuccUCGa -3' miRNA: 3'- -CCGGACUUGgAGCGG--UUGCUGua---AGC- -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 33749 | 0.73 | 0.405926 |
|
Target: 5'- cGGCCaGGGCCUUgaugGUCGGCGGCAggUUCGg -3' miRNA: 3'- -CCGGaCUUGGAG----CGGUUGCUGU--AAGC- -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 13578 | 0.73 | 0.405926 |
|
Target: 5'- cGCCUGGGCUacgacaUCGCCGACGuucCGUUCc -3' miRNA: 3'- cCGGACUUGG------AGCGGUUGCu--GUAAGc -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 22448 | 0.73 | 0.396443 |
|
Target: 5'- aGGuCCUGAACCUCGUgGACGAgGc--- -3' miRNA: 3'- -CC-GGACUUGGAGCGgUUGCUgUaagc -5' |
|||||||
| 22368 | 5' | -52.3 | NC_005045.1 | + | 34633 | 1.13 | 0.000872 |
|
Target: 5'- cGGCCUGAACCUCGCCAACGACAUUCGg -3' miRNA: 3'- -CCGGACUUGGAGCGGUUGCUGUAAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home