miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22368 5' -52.3 NC_005045.1 + 32928 0.67 0.738073
Target:  5'- uGGCCUGGGCCaccuugggacucaUCGCCccaggguuccgcagGGCaGCGUUCa -3'
miRNA:   3'- -CCGGACUUGG-------------AGCGG--------------UUGcUGUAAGc -5'
22368 5' -52.3 NC_005045.1 + 5073 0.69 0.664683
Target:  5'- aGCCUGGGCU--GCCGACGACuggaCGg -3'
miRNA:   3'- cCGGACUUGGagCGGUUGCUGuaa-GC- -5'
22368 5' -52.3 NC_005045.1 + 3928 0.69 0.642005
Target:  5'- gGGCCUGAaguuGCCa-GCaCAAUGACGccUUCGa -3'
miRNA:   3'- -CCGGACU----UGGagCG-GUUGCUGU--AAGC- -5'
22368 5' -52.3 NC_005045.1 + 33276 0.7 0.607943
Target:  5'- uGGCCUGAGCCUUGgUGuaaccCGGCAUggCGu -3'
miRNA:   3'- -CCGGACUUGGAGCgGUu----GCUGUAa-GC- -5'
22368 5' -52.3 NC_005045.1 + 25070 0.7 0.59662
Target:  5'- uGGCCUGGACCggCGCCAcuugGGCGgugaUCa -3'
miRNA:   3'- -CCGGACUUGGa-GCGGUug--CUGUa---AGc -5'
22368 5' -52.3 NC_005045.1 + 28744 0.71 0.548413
Target:  5'- aGCCUGAGCCUggauggagugcgccUGCuCGGCGAgGUUCc -3'
miRNA:   3'- cCGGACUUGGA--------------GCG-GUUGCUgUAAGc -5'
22368 5' -52.3 NC_005045.1 + 28595 0.71 0.507939
Target:  5'- cGGCCUGAGCCUCGgcgcuuCCGcCGGCuagCa -3'
miRNA:   3'- -CCGGACUUGGAGC------GGUuGCUGuaaGc -5'
22368 5' -52.3 NC_005045.1 + 29886 0.72 0.497212
Target:  5'- uGGCCUGAGCaUCGCUccAGCGGCccuccUCGa -3'
miRNA:   3'- -CCGGACUUGgAGCGG--UUGCUGua---AGC- -5'
22368 5' -52.3 NC_005045.1 + 33749 0.73 0.405926
Target:  5'- cGGCCaGGGCCUUgaugGUCGGCGGCAggUUCGg -3'
miRNA:   3'- -CCGGaCUUGGAG----CGGUUGCUGU--AAGC- -5'
22368 5' -52.3 NC_005045.1 + 22520 0.66 0.833187
Target:  5'- -cCCUuGGCCUCGUCcACGAgGUUCa -3'
miRNA:   3'- ccGGAcUUGGAGCGGuUGCUgUAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.