Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 33948 | 0.67 | 0.749921 |
Target: 5'- aGGCCaggGAugccacggaacacuGCCUCGCUGAUGGC--UCGg -3' miRNA: 3'- -CCGGa--CU--------------UGGAGCGGUUGCUGuaAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 36953 | 0.67 | 0.774175 |
Target: 5'- uGCCaGGGCCUCGCUgaacuACGGCAa--- -3' miRNA: 3'- cCGGaCUUGGAGCGGu----UGCUGUaagc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 15017 | 0.66 | 0.794599 |
Target: 5'- gGGCCUcGGcaguaccuaccACCggGgCGGCGACAUUCGc -3' miRNA: 3'- -CCGGA-CU-----------UGGagCgGUUGCUGUAAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 6252 | 0.66 | 0.794599 |
Target: 5'- aGCC---ACCaUCGCCGGCGGCG-UCGu -3' miRNA: 3'- cCGGacuUGG-AGCGGUUGCUGUaAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22409 | 0.66 | 0.8143 |
Target: 5'- uGGCCgcgaccguaGugCUCGCCAgggGCGAgGUUCc -3' miRNA: 3'- -CCGGac-------UugGAGCGGU---UGCUgUAAGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 21602 | 0.66 | 0.8143 |
Target: 5'- cGCCUGuGCC-CGCCugauucCGGCGUcgUCGa -3' miRNA: 3'- cCGGACuUGGaGCGGuu----GCUGUA--AGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22322 | 0.66 | 0.823851 |
Target: 5'- uGCCgaccugGAACCUCGCCccuGGCGAgCAcuacggUCGc -3' miRNA: 3'- cCGGa-----CUUGGAGCGG---UUGCU-GUa-----AGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 41289 | 0.66 | 0.833187 |
Target: 5'- uGGCCUGAuCCgCGCUguAGCGGCcuaUCa -3' miRNA: 3'- -CCGGACUuGGaGCGG--UUGCUGua-AGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 10510 | 0.66 | 0.833187 |
Target: 5'- cGGCUaccACCgCGCCAugGGC-UUCGa -3' miRNA: 3'- -CCGGacuUGGaGCGGUugCUGuAAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22520 | 0.66 | 0.833187 |
Target: 5'- -cCCUuGGCCUCGUCcACGAgGUUCa -3' miRNA: 3'- ccGGAcUUGGAGCGGuUGCUgUAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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