Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 39495 | 0.7 | 0.562881 |
Target: 5'- uGGCCUGGGCU--GCCGACGAgCGcUUCa -3' miRNA: 3'- -CCGGACUUGGagCGGUUGCU-GU-AAGc -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 35864 | 0.69 | 0.642005 |
Target: 5'- -aCCgcGAACCUCGCUcucGACGGCGUacUCGa -3' miRNA: 3'- ccGGa-CUUGGAGCGG---UUGCUGUA--AGC- -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 33902 | 0.69 | 0.653355 |
Target: 5'- uGGCCUGGACCggGCUGACGcCGa--- -3' miRNA: 3'- -CCGGACUUGGagCGGUUGCuGUaagc -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 4048 | 0.68 | 0.709553 |
Target: 5'- cGGCCUGuacugcuGCCUCGgCCuGCuGGCAggCGc -3' miRNA: 3'- -CCGGACu------UGGAGC-GGuUG-CUGUaaGC- -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 20137 | 0.68 | 0.720599 |
Target: 5'- aGGCCaaggacgaguUGGACCccaugcgcaaCGCCAACGGCAU-CGc -3' miRNA: 3'- -CCGG----------ACUUGGa---------GCGGUUGCUGUAaGC- -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 31191 | 0.67 | 0.739157 |
Target: 5'- cGCCUGAGCaagccgcgcaguggUUCGCCGAgGACAc--- -3' miRNA: 3'- cCGGACUUG--------------GAGCGGUUgCUGUaagc -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 36953 | 0.67 | 0.774175 |
Target: 5'- uGCCaGGGCCUCGCUgaacuACGGCAa--- -3' miRNA: 3'- cCGGaCUUGGAGCGGu----UGCUGUaagc -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 6252 | 0.66 | 0.794599 |
Target: 5'- aGCC---ACCaUCGCCGGCGGCG-UCGu -3' miRNA: 3'- cCGGacuUGG-AGCGGUUGCUGUaAGC- -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 22322 | 0.66 | 0.823851 |
Target: 5'- uGCCgaccugGAACCUCGCCccuGGCGAgCAcuacggUCGc -3' miRNA: 3'- cCGGa-----CUUGGAGCGG---UUGCU-GUa-----AGC- -5' |
|||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 34633 | 1.13 | 0.000872 |
Target: 5'- cGGCCUGAACCUCGCCAACGACAUUCGg -3' miRNA: 3'- -CCGGACUUGGAGCGGUUGCUGUAAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home