miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22368 5' -52.3 NC_005045.1 + 21602 0.66 0.8143
Target:  5'- cGCCUGuGCC-CGCCugauucCGGCGUcgUCGa -3'
miRNA:   3'- cCGGACuUGGaGCGGuu----GCUGUA--AGC- -5'
22368 5' -52.3 NC_005045.1 + 20137 0.68 0.720599
Target:  5'- aGGCCaaggacgaguUGGACCccaugcgcaaCGCCAACGGCAU-CGc -3'
miRNA:   3'- -CCGG----------ACUUGGa---------GCGGUUGCUGUAaGC- -5'
22368 5' -52.3 NC_005045.1 + 15017 0.66 0.794599
Target:  5'- gGGCCUcGGcaguaccuaccACCggGgCGGCGACAUUCGc -3'
miRNA:   3'- -CCGGA-CU-----------UGGagCgGUUGCUGUAAGC- -5'
22368 5' -52.3 NC_005045.1 + 14244 0.71 0.518761
Target:  5'- cGCCUGGGCUUCGCacuguggGGCGACGUg-- -3'
miRNA:   3'- cCGGACUUGGAGCGg------UUGCUGUAagc -5'
22368 5' -52.3 NC_005045.1 + 13578 0.73 0.405926
Target:  5'- cGCCUGGGCUacgacaUCGCCGACGuucCGUUCc -3'
miRNA:   3'- cCGGACUUGG------AGCGGUUGCu--GUAAGc -5'
22368 5' -52.3 NC_005045.1 + 10510 0.66 0.833187
Target:  5'- cGGCUaccACCgCGCCAugGGC-UUCGa -3'
miRNA:   3'- -CCGGacuUGGaGCGGUugCUGuAAGC- -5'
22368 5' -52.3 NC_005045.1 + 6252 0.66 0.794599
Target:  5'- aGCC---ACCaUCGCCGGCGGCG-UCGu -3'
miRNA:   3'- cCGGacuUGG-AGCGGUUGCUGUaAGC- -5'
22368 5' -52.3 NC_005045.1 + 5073 0.69 0.664683
Target:  5'- aGCCUGGGCU--GCCGACGACuggaCGg -3'
miRNA:   3'- cCGGACUUGGagCGGUUGCUGuaa-GC- -5'
22368 5' -52.3 NC_005045.1 + 4048 0.68 0.709553
Target:  5'- cGGCCUGuacugcuGCCUCGgCCuGCuGGCAggCGc -3'
miRNA:   3'- -CCGGACu------UGGAGC-GGuUG-CUGUaaGC- -5'
22368 5' -52.3 NC_005045.1 + 3928 0.69 0.642005
Target:  5'- gGGCCUGAaguuGCCa-GCaCAAUGACGccUUCGa -3'
miRNA:   3'- -CCGGACU----UGGagCG-GUUGCUGU--AAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.