miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 26118 0.67 0.752112
Target:  5'- aCAGCuCGCcacggUGCu--GCGCCACCA-GCa -3'
miRNA:   3'- -GUUG-GCGa----ACGucuUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 4065 0.67 0.752112
Target:  5'- uCGGCCuGCUgGCAG-GCGCCugCuacUGCa -3'
miRNA:   3'- -GUUGG-CGAaCGUCuUGUGGugGu--ACG- -5'
22370 3' -51.4 NC_005045.1 + 12090 0.68 0.74002
Target:  5'- cCGGCC-CUUGUAccGCACCucgccaccguagaGCCAUGCg -3'
miRNA:   3'- -GUUGGcGAACGUcuUGUGG-------------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 30238 0.68 0.718798
Target:  5'- aGGCCGa--GCAGGGCGCCgugGCCuggGCg -3'
miRNA:   3'- gUUGGCgaaCGUCUUGUGG---UGGua-CG- -5'
22370 3' -51.4 NC_005045.1 + 7021 0.68 0.718798
Target:  5'- -cGCCGaCUUGggcuGGAGCACCACCcaccGCg -3'
miRNA:   3'- guUGGC-GAACg---UCUUGUGGUGGua--CG- -5'
22370 3' -51.4 NC_005045.1 + 29965 0.68 0.707484
Target:  5'- --cCCGCUUcCAGGGcCGCCAUgAUGCc -3'
miRNA:   3'- guuGGCGAAcGUCUU-GUGGUGgUACG- -5'
22370 3' -51.4 NC_005045.1 + 16976 0.68 0.696088
Target:  5'- cCAGCaGCUugUGCAGGGcCACCAgCAggUGCa -3'
miRNA:   3'- -GUUGgCGA--ACGUCUU-GUGGUgGU--ACG- -5'
22370 3' -51.4 NC_005045.1 + 23431 0.68 0.696088
Target:  5'- uGACCuGCg-GCAG-GCACCGCCAccgGCu -3'
miRNA:   3'- gUUGG-CGaaCGUCuUGUGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 32572 0.68 0.696088
Target:  5'- aAGCCGCUc-CAGGGCAUCGCCGc-- -3'
miRNA:   3'- gUUGGCGAacGUCUUGUGGUGGUacg -5'
22370 3' -51.4 NC_005045.1 + 13141 0.69 0.684622
Target:  5'- --uCCGCgacagUGCAGAG-GCCACCA-GCc -3'
miRNA:   3'- guuGGCGa----ACGUCUUgUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 17870 0.69 0.684622
Target:  5'- gCGGCgGCcaUUGCAuuGAACGCC-UCAUGCa -3'
miRNA:   3'- -GUUGgCG--AACGU--CUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 7983 0.69 0.669636
Target:  5'- aGGCgCGCUUGCAGGucugcugcaacaugAuCGCCGCCA-GCc -3'
miRNA:   3'- gUUG-GCGAACGUCU--------------U-GUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 18594 0.69 0.661537
Target:  5'- cCAACCGCUUcacaggGCGGGGCGgCACgA-GCg -3'
miRNA:   3'- -GUUGGCGAA------CGUCUUGUgGUGgUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32727 0.69 0.661537
Target:  5'- aGGCagaGCUgGCAGuguCGCCGCCcUGCa -3'
miRNA:   3'- gUUGg--CGAaCGUCuu-GUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 32205 0.69 0.649942
Target:  5'- --cCCGaCUUGCccAGCGCCGCCA-GCa -3'
miRNA:   3'- guuGGC-GAACGucUUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 2850 0.69 0.649942
Target:  5'- gGGCCGCUgcaacGCAGccGACAUggCGCUGUGCg -3'
miRNA:   3'- gUUGGCGAa----CGUC--UUGUG--GUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 39541 0.69 0.638329
Target:  5'- aGGCCaCUUGCucAGGACACUcUCGUGCg -3'
miRNA:   3'- gUUGGcGAACG--UCUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 22107 0.7 0.603498
Target:  5'- -cACCGCguaggaGCGGAGCG--ACCAUGCg -3'
miRNA:   3'- guUGGCGaa----CGUCUUGUggUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 16926 0.7 0.580396
Target:  5'- aAGCUGCUggacgaaGCGGAcauCAUCAUCGUGCa -3'
miRNA:   3'- gUUGGCGAa------CGUCUu--GUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 40583 0.71 0.534839
Target:  5'- gCAGCCGC---CAGGGCugCGCCGcGCa -3'
miRNA:   3'- -GUUGGCGaacGUCUUGugGUGGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.