Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 18425 | 0.66 | 0.804736 |
Target: 5'- cCAACCGgaCUUcgaucucgcgGCAGAGCAUCuugcCCAUGUg -3' miRNA: 3'- -GUUGGC--GAA----------CGUCUUGUGGu---GGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 18594 | 0.69 | 0.661537 |
Target: 5'- cCAACCGCUUcacaggGCGGGGCGgCACgA-GCg -3' miRNA: 3'- -GUUGGCGAA------CGUCUUGUgGUGgUaCG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 20830 | 0.67 | 0.784201 |
Target: 5'- gCAGuCCGCUUGCGccgccgaGACGCCAUCGcaguggaguUGCg -3' miRNA: 3'- -GUU-GGCGAACGUc------UUGUGGUGGU---------ACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 22107 | 0.7 | 0.603498 |
Target: 5'- -cACCGCguaggaGCGGAGCG--ACCAUGCg -3' miRNA: 3'- guUGGCGaa----CGUCUUGUggUGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 23431 | 0.68 | 0.696088 |
Target: 5'- uGACCuGCg-GCAG-GCACCGCCAccgGCu -3' miRNA: 3'- gUUGG-CGaaCGUCuUGUGGUGGUa--CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 23847 | 0.67 | 0.762962 |
Target: 5'- gCAGCCuGCUU-CAGGACggccucACCACCGacgGCg -3' miRNA: 3'- -GUUGG-CGAAcGUCUUG------UGGUGGUa--CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 26118 | 0.67 | 0.752112 |
Target: 5'- aCAGCuCGCcacggUGCu--GCGCCACCA-GCa -3' miRNA: 3'- -GUUG-GCGa----ACGucuUGUGGUGGUaCG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 26808 | 0.78 | 0.211687 |
Target: 5'- -cGCCGCUggGCAGAGCggGCCGCCuacgGCa -3' miRNA: 3'- guUGGCGAa-CGUCUUG--UGGUGGua--CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 27517 | 0.67 | 0.752112 |
Target: 5'- gUAGCCGC-UGgAGGcCGCCGCCuggAUGUa -3' miRNA: 3'- -GUUGGCGaACgUCUuGUGGUGG---UACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 28531 | 0.67 | 0.762962 |
Target: 5'- aCGGCuUGCUUGCGGuAGCuaGCgGCCAUGa -3' miRNA: 3'- -GUUG-GCGAACGUC-UUG--UGgUGGUACg -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 29965 | 0.68 | 0.707484 |
Target: 5'- --cCCGCUUcCAGGGcCGCCAUgAUGCc -3' miRNA: 3'- guuGGCGAAcGUCUU-GUGGUGgUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 30238 | 0.68 | 0.718798 |
Target: 5'- aGGCCGa--GCAGGGCGCCgugGCCuggGCg -3' miRNA: 3'- gUUGGCgaaCGUCUUGUGG---UGGua-CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32166 | 0.76 | 0.285862 |
Target: 5'- aCGACCGagccGCAGAGCACgGCCA-GCg -3' miRNA: 3'- -GUUGGCgaa-CGUCUUGUGgUGGUaCG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32205 | 0.69 | 0.649942 |
Target: 5'- --cCCGaCUUGCccAGCGCCGCCA-GCa -3' miRNA: 3'- guuGGC-GAACGucUUGUGGUGGUaCG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32304 | 0.67 | 0.762962 |
Target: 5'- aGACC-CcaGCAGAGCACCcacGCCA-GCg -3' miRNA: 3'- gUUGGcGaaCGUCUUGUGG---UGGUaCG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32572 | 0.68 | 0.696088 |
Target: 5'- aAGCCGCUc-CAGGGCAUCGCCGc-- -3' miRNA: 3'- gUUGGCGAacGUCUUGUGGUGGUacg -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32727 | 0.69 | 0.661537 |
Target: 5'- aGGCagaGCUgGCAGuguCGCCGCCcUGCa -3' miRNA: 3'- gUUGg--CGAaCGUCuu-GUGGUGGuACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32757 | 0.67 | 0.762962 |
Target: 5'- -cACCGCUccaggacgUGUAG-GCACCaacccggugACCGUGCu -3' miRNA: 3'- guUGGCGA--------ACGUCuUGUGG---------UGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32820 | 0.67 | 0.773663 |
Target: 5'- -uACCGUcgGCGugauGAACGCUGCCcUGCg -3' miRNA: 3'- guUGGCGaaCGU----CUUGUGGUGGuACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32853 | 0.71 | 0.512525 |
Target: 5'- gGACCGCUUcGUGGAGCACgguCACCggGUu -3' miRNA: 3'- gUUGGCGAA-CGUCUUGUG---GUGGuaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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