miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 13141 0.69 0.684622
Target:  5'- --uCCGCgacagUGCAGAG-GCCACCA-GCc -3'
miRNA:   3'- guuGGCGa----ACGUCUUgUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 23431 0.68 0.696088
Target:  5'- uGACCuGCg-GCAG-GCACCGCCAccgGCu -3'
miRNA:   3'- gUUGG-CGaaCGUCuUGUGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 32572 0.68 0.696088
Target:  5'- aAGCCGCUc-CAGGGCAUCGCCGc-- -3'
miRNA:   3'- gUUGGCGAacGUCUUGUGGUGGUacg -5'
22370 3' -51.4 NC_005045.1 + 16976 0.68 0.696088
Target:  5'- cCAGCaGCUugUGCAGGGcCACCAgCAggUGCa -3'
miRNA:   3'- -GUUGgCGA--ACGUCUU-GUGGUgGU--ACG- -5'
22370 3' -51.4 NC_005045.1 + 29965 0.68 0.707484
Target:  5'- --cCCGCUUcCAGGGcCGCCAUgAUGCc -3'
miRNA:   3'- guuGGCGAAcGUCUU-GUGGUGgUACG- -5'
22370 3' -51.4 NC_005045.1 + 7021 0.68 0.718798
Target:  5'- -cGCCGaCUUGggcuGGAGCACCACCcaccGCg -3'
miRNA:   3'- guUGGC-GAACg---UCUUGUGGUGGua--CG- -5'
22370 3' -51.4 NC_005045.1 + 30238 0.68 0.718798
Target:  5'- aGGCCGa--GCAGGGCGCCgugGCCuggGCg -3'
miRNA:   3'- gUUGGCgaaCGUCUUGUGG---UGGua-CG- -5'
22370 3' -51.4 NC_005045.1 + 12090 0.68 0.74002
Target:  5'- cCGGCC-CUUGUAccGCACCucgccaccguagaGCCAUGCg -3'
miRNA:   3'- -GUUGGcGAACGUcuUGUGG-------------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 26118 0.67 0.752112
Target:  5'- aCAGCuCGCcacggUGCu--GCGCCACCA-GCa -3'
miRNA:   3'- -GUUG-GCGa----ACGucuUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 27517 0.67 0.752112
Target:  5'- gUAGCCGC-UGgAGGcCGCCGCCuggAUGUa -3'
miRNA:   3'- -GUUGGCGaACgUCUuGUGGUGG---UACG- -5'
22370 3' -51.4 NC_005045.1 + 4065 0.67 0.752112
Target:  5'- uCGGCCuGCUgGCAG-GCGCCugCuacUGCa -3'
miRNA:   3'- -GUUGG-CGAaCGUCuUGUGGugGu--ACG- -5'
22370 3' -51.4 NC_005045.1 + 28531 0.67 0.762962
Target:  5'- aCGGCuUGCUUGCGGuAGCuaGCgGCCAUGa -3'
miRNA:   3'- -GUUG-GCGAACGUC-UUG--UGgUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 32757 0.67 0.762962
Target:  5'- -cACCGCUccaggacgUGUAG-GCACCaacccggugACCGUGCu -3'
miRNA:   3'- guUGGCGA--------ACGUCuUGUGG---------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32304 0.67 0.762962
Target:  5'- aGACC-CcaGCAGAGCACCcacGCCA-GCg -3'
miRNA:   3'- gUUGGcGaaCGUCUUGUGG---UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 23847 0.67 0.762962
Target:  5'- gCAGCCuGCUU-CAGGACggccucACCACCGacgGCg -3'
miRNA:   3'- -GUUGG-CGAAcGUCUUG------UGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 32820 0.67 0.773663
Target:  5'- -uACCGUcgGCGugauGAACGCUGCCcUGCg -3'
miRNA:   3'- guUGGCGaaCGU----CUUGUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 14131 0.67 0.784201
Target:  5'- gCggUCGCaucuucccgGCGG-GCACCGCCAUGg -3'
miRNA:   3'- -GuuGGCGaa-------CGUCuUGUGGUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 20830 0.67 0.784201
Target:  5'- gCAGuCCGCUUGCGccgccgaGACGCCAUCGcaguggaguUGCg -3'
miRNA:   3'- -GUU-GGCGAACGUc------UUGUGGUGGU---------ACG- -5'
22370 3' -51.4 NC_005045.1 + 2911 0.67 0.794563
Target:  5'- uCGGCUGCgUUGCAGcGGC-CCGCCggGUc -3'
miRNA:   3'- -GUUGGCG-AACGUC-UUGuGGUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 2318 0.66 0.804736
Target:  5'- uCAACCGC--GCuaucGACGCCAuCCGUGUc -3'
miRNA:   3'- -GUUGGCGaaCGuc--UUGUGGU-GGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.