miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 2318 0.66 0.804736
Target:  5'- uCAACCGC--GCuaucGACGCCAuCCGUGUc -3'
miRNA:   3'- -GUUGGCGaaCGuc--UUGUGGU-GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 2850 0.69 0.649942
Target:  5'- gGGCCGCUgcaacGCAGccGACAUggCGCUGUGCg -3'
miRNA:   3'- gUUGGCGAa----CGUC--UUGUG--GUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 2911 0.67 0.794563
Target:  5'- uCGGCUGCgUUGCAGcGGC-CCGCCggGUc -3'
miRNA:   3'- -GUUGGCG-AACGUC-UUGuGGUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 4065 0.67 0.752112
Target:  5'- uCGGCCuGCUgGCAG-GCGCCugCuacUGCa -3'
miRNA:   3'- -GUUGG-CGAaCGUCuUGUGGugGu--ACG- -5'
22370 3' -51.4 NC_005045.1 + 6838 0.66 0.843293
Target:  5'- cCAGCCauuccgGCggagGUGGAGCACaCACUcgGCg -3'
miRNA:   3'- -GUUGG------CGaa--CGUCUUGUG-GUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 7021 0.68 0.718798
Target:  5'- -cGCCGaCUUGggcuGGAGCACCACCcaccGCg -3'
miRNA:   3'- guUGGC-GAACg---UCUUGUGGUGGua--CG- -5'
22370 3' -51.4 NC_005045.1 + 7983 0.69 0.669636
Target:  5'- aGGCgCGCUUGCAGGucugcugcaacaugAuCGCCGCCA-GCc -3'
miRNA:   3'- gUUG-GCGAACGUCU--------------U-GUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 10183 0.84 0.093557
Target:  5'- --cCCGC-UGCGGGACACCacGCCAUGCg -3'
miRNA:   3'- guuGGCGaACGUCUUGUGG--UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 12090 0.68 0.74002
Target:  5'- cCGGCC-CUUGUAccGCACCucgccaccguagaGCCAUGCg -3'
miRNA:   3'- -GUUGGcGAACGUcuUGUGG-------------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 12490 0.66 0.814707
Target:  5'- -cGCCGCUggUGCuGAACAcgggcgauccauCCGCCAgggugaggGCg -3'
miRNA:   3'- guUGGCGA--ACGuCUUGU------------GGUGGUa-------CG- -5'
22370 3' -51.4 NC_005045.1 + 13141 0.69 0.684622
Target:  5'- --uCCGCgacagUGCAGAG-GCCACCA-GCc -3'
miRNA:   3'- guuGGCGa----ACGUCUUgUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 13495 0.66 0.814707
Target:  5'- cCGACUGCcacaAGGACACCGCCGc-- -3'
miRNA:   3'- -GUUGGCGaacgUCUUGUGGUGGUacg -5'
22370 3' -51.4 NC_005045.1 + 14103 0.71 0.523636
Target:  5'- gGGCgGCUUGCAGAGCGuuGaguuguugagUCAUGCg -3'
miRNA:   3'- gUUGgCGAACGUCUUGUggU----------GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 14131 0.67 0.784201
Target:  5'- gCggUCGCaucuucccgGCGG-GCACCGCCAUGg -3'
miRNA:   3'- -GuuGGCGaa-------CGUCuUGUGGUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 16236 0.74 0.398077
Target:  5'- gGACCGg-UGCAGGACACCccgcACCAaGCc -3'
miRNA:   3'- gUUGGCgaACGUCUUGUGG----UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 16926 0.7 0.580396
Target:  5'- aAGCUGCUggacgaaGCGGAcauCAUCAUCGUGCa -3'
miRNA:   3'- gUUGGCGAa------CGUCUu--GUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 16976 0.68 0.696088
Target:  5'- cCAGCaGCUugUGCAGGGcCACCAgCAggUGCa -3'
miRNA:   3'- -GUUGgCGA--ACGUCUU-GUGGUgGU--ACG- -5'
22370 3' -51.4 NC_005045.1 + 17470 0.66 0.814707
Target:  5'- cCAGCCGCc-GCAGc-CGCCGCagugauaGUGCu -3'
miRNA:   3'- -GUUGGCGaaCGUCuuGUGGUGg------UACG- -5'
22370 3' -51.4 NC_005045.1 + 17870 0.69 0.684622
Target:  5'- gCGGCgGCcaUUGCAuuGAACGCC-UCAUGCa -3'
miRNA:   3'- -GUUGgCG--AACGU--CUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 18120 0.75 0.351742
Target:  5'- uCGACCGCaucccCAGGGCACgCAUCAUGCu -3'
miRNA:   3'- -GUUGGCGaac--GUCUUGUG-GUGGUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.