miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 40583 0.71 0.534839
Target:  5'- gCAGCCGC---CAGGGCugCGCCGcGCa -3'
miRNA:   3'- -GUUGGCGaacGUCUUGugGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 39889 0.66 0.843293
Target:  5'- gCAugUGgUUGCGGAagagcugaccaACugCACCA-GCg -3'
miRNA:   3'- -GUugGCgAACGUCU-----------UGugGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 39541 0.69 0.638329
Target:  5'- aGGCCaCUUGCucAGGACACUcUCGUGCg -3'
miRNA:   3'- gUUGGcGAACG--UCUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 38206 0.66 0.814707
Target:  5'- aGACCGCgagUGCuGAGCGgCUggGCC-UGCu -3'
miRNA:   3'- gUUGGCGa--ACGuCUUGU-GG--UGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 36976 0.75 0.317518
Target:  5'- gCAACCGCgcagUGUGGGAUuCCACCAcugGCg -3'
miRNA:   3'- -GUUGGCGa---ACGUCUUGuGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 36480 0.66 0.843293
Target:  5'- ---aUGCUugUGCGGGACGCUACCcUGa -3'
miRNA:   3'- guugGCGA--ACGUCUUGUGGUGGuACg -5'
22370 3' -51.4 NC_005045.1 + 36188 1.13 0.000887
Target:  5'- uCAACCGCUUGCAGAACACCACCAUGCa -3'
miRNA:   3'- -GUUGGCGAACGUCUUGUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 35946 0.66 0.843293
Target:  5'- -cGCCGCcaaUGaGGcGCugCGCCGUGCc -3'
miRNA:   3'- guUGGCGa--ACgUCuUGugGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 34446 0.73 0.427693
Target:  5'- cCAGCgGCcUGaccAGCGCCACCAUGCu -3'
miRNA:   3'- -GUUGgCGaACgucUUGUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 33259 0.66 0.824465
Target:  5'- uGACCGaggagGCuagccuGGAgACCAUCGUGCa -3'
miRNA:   3'- gUUGGCgaa--CGu-----CUUgUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32853 0.71 0.512525
Target:  5'- gGACCGCUUcGUGGAGCACgguCACCggGUu -3'
miRNA:   3'- gUUGGCGAA-CGUCUUGUG---GUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 32820 0.67 0.773663
Target:  5'- -uACCGUcgGCGugauGAACGCUGCCcUGCg -3'
miRNA:   3'- guUGGCGaaCGU----CUUGUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 32757 0.67 0.762962
Target:  5'- -cACCGCUccaggacgUGUAG-GCACCaacccggugACCGUGCu -3'
miRNA:   3'- guUGGCGA--------ACGUCuUGUGG---------UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32727 0.69 0.661537
Target:  5'- aGGCagaGCUgGCAGuguCGCCGCCcUGCa -3'
miRNA:   3'- gUUGg--CGAaCGUCuu-GUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 32572 0.68 0.696088
Target:  5'- aAGCCGCUc-CAGGGCAUCGCCGc-- -3'
miRNA:   3'- gUUGGCGAacGUCUUGUGGUGGUacg -5'
22370 3' -51.4 NC_005045.1 + 32304 0.67 0.762962
Target:  5'- aGACC-CcaGCAGAGCACCcacGCCA-GCg -3'
miRNA:   3'- gUUGGcGaaCGUCUUGUGG---UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32205 0.69 0.649942
Target:  5'- --cCCGaCUUGCccAGCGCCGCCA-GCa -3'
miRNA:   3'- guuGGC-GAACGucUUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32166 0.76 0.285862
Target:  5'- aCGACCGagccGCAGAGCACgGCCA-GCg -3'
miRNA:   3'- -GUUGGCgaa-CGUCUUGUGgUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 30238 0.68 0.718798
Target:  5'- aGGCCGa--GCAGGGCGCCgugGCCuggGCg -3'
miRNA:   3'- gUUGGCgaaCGUCUUGUGG---UGGua-CG- -5'
22370 3' -51.4 NC_005045.1 + 29965 0.68 0.707484
Target:  5'- --cCCGCUUcCAGGGcCGCCAUgAUGCc -3'
miRNA:   3'- guuGGCGAAcGUCUU-GUGGUGgUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.