miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 28531 0.67 0.762962
Target:  5'- aCGGCuUGCUUGCGGuAGCuaGCgGCCAUGa -3'
miRNA:   3'- -GUUG-GCGAACGUC-UUG--UGgUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 27517 0.67 0.752112
Target:  5'- gUAGCCGC-UGgAGGcCGCCGCCuggAUGUa -3'
miRNA:   3'- -GUUGGCGaACgUCUuGUGGUGG---UACG- -5'
22370 3' -51.4 NC_005045.1 + 26808 0.78 0.211687
Target:  5'- -cGCCGCUggGCAGAGCggGCCGCCuacgGCa -3'
miRNA:   3'- guUGGCGAa-CGUCUUG--UGGUGGua--CG- -5'
22370 3' -51.4 NC_005045.1 + 26118 0.67 0.752112
Target:  5'- aCAGCuCGCcacggUGCu--GCGCCACCA-GCa -3'
miRNA:   3'- -GUUG-GCGa----ACGucuUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 23847 0.67 0.762962
Target:  5'- gCAGCCuGCUU-CAGGACggccucACCACCGacgGCg -3'
miRNA:   3'- -GUUGG-CGAAcGUCUUG------UGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 23431 0.68 0.696088
Target:  5'- uGACCuGCg-GCAG-GCACCGCCAccgGCu -3'
miRNA:   3'- gUUGG-CGaaCGUCuUGUGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 22107 0.7 0.603498
Target:  5'- -cACCGCguaggaGCGGAGCG--ACCAUGCg -3'
miRNA:   3'- guUGGCGaa----CGUCUUGUggUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 20830 0.67 0.784201
Target:  5'- gCAGuCCGCUUGCGccgccgaGACGCCAUCGcaguggaguUGCg -3'
miRNA:   3'- -GUU-GGCGAACGUc------UUGUGGUGGU---------ACG- -5'
22370 3' -51.4 NC_005045.1 + 18594 0.69 0.661537
Target:  5'- cCAACCGCUUcacaggGCGGGGCGgCACgA-GCg -3'
miRNA:   3'- -GUUGGCGAA------CGUCUUGUgGUGgUaCG- -5'
22370 3' -51.4 NC_005045.1 + 18425 0.66 0.804736
Target:  5'- cCAACCGgaCUUcgaucucgcgGCAGAGCAUCuugcCCAUGUg -3'
miRNA:   3'- -GUUGGC--GAA----------CGUCUUGUGGu---GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 18120 0.75 0.351742
Target:  5'- uCGACCGCaucccCAGGGCACgCAUCAUGCu -3'
miRNA:   3'- -GUUGGCGaac--GUCUUGUG-GUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 17870 0.69 0.684622
Target:  5'- gCGGCgGCcaUUGCAuuGAACGCC-UCAUGCa -3'
miRNA:   3'- -GUUGgCG--AACGU--CUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 17470 0.66 0.814707
Target:  5'- cCAGCCGCc-GCAGc-CGCCGCagugauaGUGCu -3'
miRNA:   3'- -GUUGGCGaaCGUCuuGUGGUGg------UACG- -5'
22370 3' -51.4 NC_005045.1 + 16976 0.68 0.696088
Target:  5'- cCAGCaGCUugUGCAGGGcCACCAgCAggUGCa -3'
miRNA:   3'- -GUUGgCGA--ACGUCUU-GUGGUgGU--ACG- -5'
22370 3' -51.4 NC_005045.1 + 16926 0.7 0.580396
Target:  5'- aAGCUGCUggacgaaGCGGAcauCAUCAUCGUGCa -3'
miRNA:   3'- gUUGGCGAa------CGUCUu--GUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 16236 0.74 0.398077
Target:  5'- gGACCGg-UGCAGGACACCccgcACCAaGCc -3'
miRNA:   3'- gUUGGCgaACGUCUUGUGG----UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 14131 0.67 0.784201
Target:  5'- gCggUCGCaucuucccgGCGG-GCACCGCCAUGg -3'
miRNA:   3'- -GuuGGCGaa-------CGUCuUGUGGUGGUACg -5'
22370 3' -51.4 NC_005045.1 + 14103 0.71 0.523636
Target:  5'- gGGCgGCUUGCAGAGCGuuGaguuguugagUCAUGCg -3'
miRNA:   3'- gUUGgCGAACGUCUUGUggU----------GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 13495 0.66 0.814707
Target:  5'- cCGACUGCcacaAGGACACCGCCGc-- -3'
miRNA:   3'- -GUUGGCGaacgUCUUGUGGUGGUacg -5'
22370 3' -51.4 NC_005045.1 + 13141 0.69 0.684622
Target:  5'- --uCCGCgacagUGCAGAG-GCCACCA-GCc -3'
miRNA:   3'- guuGGCGa----ACGUCUUgUGGUGGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.