miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22376 3' -56.3 NC_005045.1 + 39631 0.66 0.5948
Target:  5'- cCCUGCCGGCGa----CGGCGGcgACGAGc -3'
miRNA:   3'- -GGACGGUCGUcauggGUCGCC--UGUUC- -5'
22376 3' -56.3 NC_005045.1 + 13247 0.66 0.5948
Target:  5'- gCCUGCCGGCaucuGGUcCUCGGCcuuguacauGACGAGg -3'
miRNA:   3'- -GGACGGUCG----UCAuGGGUCGc--------CUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 25159 0.66 0.572623
Target:  5'- ---aCCAGCGGUAUCCGGgcgaCGGGCAc- -3'
miRNA:   3'- ggacGGUCGUCAUGGGUC----GCCUGUuc -5'
22376 3' -56.3 NC_005045.1 + 16876 0.66 0.572623
Target:  5'- aCUGCCAG-GGcGCCCcGCuGGACGAc -3'
miRNA:   3'- gGACGGUCgUCaUGGGuCG-CCUGUUc -5'
22376 3' -56.3 NC_005045.1 + 19570 0.66 0.550647
Target:  5'- aCCUGCucaggacucCAGCAcUACUCGGCuauucuccgGGACGAGa -3'
miRNA:   3'- -GGACG---------GUCGUcAUGGGUCG---------CCUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 6843 0.66 0.539755
Target:  5'- uCUUGCCAGCcau-UCCGGCGGAgGu- -3'
miRNA:   3'- -GGACGGUCGucauGGGUCGCCUgUuc -5'
22376 3' -56.3 NC_005045.1 + 28528 0.67 0.50755
Target:  5'- gCUUGCUuGCGGUAgCUAGCGGcCAu- -3'
miRNA:   3'- -GGACGGuCGUCAUgGGUCGCCuGUuc -5'
22376 3' -56.3 NC_005045.1 + 20994 0.67 0.496994
Target:  5'- aCUGCCAGcCAGcacagGCCCAucaguuCGGAUggGg -3'
miRNA:   3'- gGACGGUC-GUCa----UGGGUc-----GCCUGuuC- -5'
22376 3' -56.3 NC_005045.1 + 8640 0.68 0.455824
Target:  5'- gCUGgUGGCAGcGCCUccugauGCGGGCAAGa -3'
miRNA:   3'- gGACgGUCGUCaUGGGu-----CGCCUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 11544 0.68 0.435938
Target:  5'- gCCggGUCuGguGUACCCAGCaGGcCGAGu -3'
miRNA:   3'- -GGa-CGGuCguCAUGGGUCG-CCuGUUC- -5'
22376 3' -56.3 NC_005045.1 + 7114 0.68 0.435938
Target:  5'- uCCUGCUGGcCAGUucGCCUcGCGGugGGu -3'
miRNA:   3'- -GGACGGUC-GUCA--UGGGuCGCCugUUc -5'
22376 3' -56.3 NC_005045.1 + 6013 0.68 0.435938
Target:  5'- --aGCCucaAGCAGggcuugACCCGGCuGGugGAGg -3'
miRNA:   3'- ggaCGG---UCGUCa-----UGGGUCG-CCugUUC- -5'
22376 3' -56.3 NC_005045.1 + 13194 0.68 0.426185
Target:  5'- -aUGCCGGCAGgcGCCUucAGCGaGAUggGg -3'
miRNA:   3'- ggACGGUCGUCa-UGGG--UCGC-CUGuuC- -5'
22376 3' -56.3 NC_005045.1 + 14125 0.69 0.416562
Target:  5'- -gUGgCGGCGGUcgcaucuuCCCGGCGGGCAc- -3'
miRNA:   3'- ggACgGUCGUCAu-------GGGUCGCCUGUuc -5'
22376 3' -56.3 NC_005045.1 + 30272 0.7 0.361724
Target:  5'- aCCUGaUAGCAucacGUugCCGGCGGAgGGGu -3'
miRNA:   3'- -GGACgGUCGU----CAugGGUCGCCUgUUC- -5'
22376 3' -56.3 NC_005045.1 + 24710 0.7 0.344595
Target:  5'- uCUUGUCGGCAGcuUGCUUGGCGGuCAGGc -3'
miRNA:   3'- -GGACGGUCGUC--AUGGGUCGCCuGUUC- -5'
22376 3' -56.3 NC_005045.1 + 24060 0.7 0.328057
Target:  5'- aCCUccGCuCGGUAuUGCUCAGCGGACAGa -3'
miRNA:   3'- -GGA--CG-GUCGUcAUGGGUCGCCUGUUc -5'
22376 3' -56.3 NC_005045.1 + 9468 0.7 0.328057
Target:  5'- cCCgGUCGGCAGUgcaauggaACCCAGUGGAa--- -3'
miRNA:   3'- -GGaCGGUCGUCA--------UGGGUCGCCUguuc -5'
22376 3' -56.3 NC_005045.1 + 4123 0.71 0.312113
Target:  5'- gCCUGCCAGCAG-GCCgaggCAGCaGuACAGGc -3'
miRNA:   3'- -GGACGGUCGUCaUGG----GUCGcC-UGUUC- -5'
22376 3' -56.3 NC_005045.1 + 11003 0.71 0.296764
Target:  5'- aUCUGCCAGCAGg---CAGCGGAUc-- -3'
miRNA:   3'- -GGACGGUCGUCauggGUCGCCUGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.