Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22376 | 3' | -56.3 | NC_005045.1 | + | 13247 | 0.66 | 0.5948 |
Target: 5'- gCCUGCCGGCaucuGGUcCUCGGCcuuguacauGACGAGg -3' miRNA: 3'- -GGACGGUCG----UCAuGGGUCGc--------CUGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 39631 | 0.66 | 0.5948 |
Target: 5'- cCCUGCCGGCGa----CGGCGGcgACGAGc -3' miRNA: 3'- -GGACGGUCGUcauggGUCGCC--UGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 25159 | 0.66 | 0.572623 |
Target: 5'- ---aCCAGCGGUAUCCGGgcgaCGGGCAc- -3' miRNA: 3'- ggacGGUCGUCAUGGGUC----GCCUGUuc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 16876 | 0.66 | 0.572623 |
Target: 5'- aCUGCCAG-GGcGCCCcGCuGGACGAc -3' miRNA: 3'- gGACGGUCgUCaUGGGuCG-CCUGUUc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 19570 | 0.66 | 0.550647 |
Target: 5'- aCCUGCucaggacucCAGCAcUACUCGGCuauucuccgGGACGAGa -3' miRNA: 3'- -GGACG---------GUCGUcAUGGGUCG---------CCUGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 6843 | 0.66 | 0.539755 |
Target: 5'- uCUUGCCAGCcau-UCCGGCGGAgGu- -3' miRNA: 3'- -GGACGGUCGucauGGGUCGCCUgUuc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 28528 | 0.67 | 0.50755 |
Target: 5'- gCUUGCUuGCGGUAgCUAGCGGcCAu- -3' miRNA: 3'- -GGACGGuCGUCAUgGGUCGCCuGUuc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 20994 | 0.67 | 0.496994 |
Target: 5'- aCUGCCAGcCAGcacagGCCCAucaguuCGGAUggGg -3' miRNA: 3'- gGACGGUC-GUCa----UGGGUc-----GCCUGuuC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 8640 | 0.68 | 0.455824 |
Target: 5'- gCUGgUGGCAGcGCCUccugauGCGGGCAAGa -3' miRNA: 3'- gGACgGUCGUCaUGGGu-----CGCCUGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 6013 | 0.68 | 0.435938 |
Target: 5'- --aGCCucaAGCAGggcuugACCCGGCuGGugGAGg -3' miRNA: 3'- ggaCGG---UCGUCa-----UGGGUCG-CCugUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 11544 | 0.68 | 0.435938 |
Target: 5'- gCCggGUCuGguGUACCCAGCaGGcCGAGu -3' miRNA: 3'- -GGa-CGGuCguCAUGGGUCG-CCuGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 7114 | 0.68 | 0.435938 |
Target: 5'- uCCUGCUGGcCAGUucGCCUcGCGGugGGu -3' miRNA: 3'- -GGACGGUC-GUCA--UGGGuCGCCugUUc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 13194 | 0.68 | 0.426185 |
Target: 5'- -aUGCCGGCAGgcGCCUucAGCGaGAUggGg -3' miRNA: 3'- ggACGGUCGUCa-UGGG--UCGC-CUGuuC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 14125 | 0.69 | 0.416562 |
Target: 5'- -gUGgCGGCGGUcgcaucuuCCCGGCGGGCAc- -3' miRNA: 3'- ggACgGUCGUCAu-------GGGUCGCCUGUuc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 30272 | 0.7 | 0.361724 |
Target: 5'- aCCUGaUAGCAucacGUugCCGGCGGAgGGGu -3' miRNA: 3'- -GGACgGUCGU----CAugGGUCGCCUgUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 24710 | 0.7 | 0.344595 |
Target: 5'- uCUUGUCGGCAGcuUGCUUGGCGGuCAGGc -3' miRNA: 3'- -GGACGGUCGUC--AUGGGUCGCCuGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 24060 | 0.7 | 0.328057 |
Target: 5'- aCCUccGCuCGGUAuUGCUCAGCGGACAGa -3' miRNA: 3'- -GGA--CG-GUCGUcAUGGGUCGCCUGUUc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 9468 | 0.7 | 0.328057 |
Target: 5'- cCCgGUCGGCAGUgcaauggaACCCAGUGGAa--- -3' miRNA: 3'- -GGaCGGUCGUCA--------UGGGUCGCCUguuc -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 4123 | 0.71 | 0.312113 |
Target: 5'- gCCUGCCAGCAG-GCCgaggCAGCaGuACAGGc -3' miRNA: 3'- -GGACGGUCGUCaUGG----GUCGcC-UGUUC- -5' |
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22376 | 3' | -56.3 | NC_005045.1 | + | 11003 | 0.71 | 0.296764 |
Target: 5'- aUCUGCCAGCAGg---CAGCGGAUc-- -3' miRNA: 3'- -GGACGGUCGUCauggGUCGCCUGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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